CF834955

Overview
NameCF834955
Unique NameCF834955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:307..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.352e-24
Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 541
            GG+SI G KF DENF  KHTGPG+LSMAN+G  T GSQFF+ T KT WLD +HVVFG ++EGMDVV A+E V +S G +  +P+ IA  G+L
Sbjct:  121 GGKSIYGSKFPDENFKLKHTGPGVLSMANAGRDTNGSQFFICTVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRGDKPVEPITIAASGEL 212          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPID_NEUCR (41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa GN=cyp-41 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.013e-24
Identity = 55/92 (59.78%), Postives = 65/92 (70.65%), Query Frame = -1
Query:  266 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 541
            GGESI G KF DENF  KH  P +LSMAN+GPGT GSQFFV T  T  LDGKHVVFG+++ G  VV+ IE + +   +  K  VIADCG+LS
Sbjct:   89 GGESIYGAKFEDENFQLKHDRPFLLSMANAGPGTNGSQFFVTTVPTPHLDGKHVVFGEVLSGKSVVRQIENLKTQGDKPTKDAVIADCGELS 180          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIB_RAT (Peptidyl-prolyl cis-trans isomerase B OS=Rattus norvegicus GN=Ppib PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 3.013e-24
Identity = 53/92 (57.61%), Postives = 68/92 (73.91%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 541
            GG+SI G +F DENF  KH GPG +SMAN+G  T GSQFF+ T KT WLDGKHVVFG+++EGMDVV+ +E   + S  +  K V+I DCG++
Sbjct:  114 GGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVIIVDCGKI 205          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIA_SCHMA (Peptidyl-prolyl cis-trans isomerase OS=Schistosoma mansoni PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.013e-24
Identity = 53/90 (58.89%), Postives = 67/90 (74.44%), Query Frame = -1
Query:  272 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 541
            GG+SI G KF DENF  KH     LSMAN+GP T GSQFF+ T    WLDGKHVVFG++V G+DVVK +E +GS+SG+ +K ++I DCG+
Sbjct:   72 GGKSIYGNKFKDENFNHKHEAFS-LSMANAGPNTNGSQFFITTVPCSWLDGKHVVFGKVVSGIDVVKKMESLGSTSGKPSKKIIIEDCGE 160          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIB_HUMAN (Peptidyl-prolyl cis-trans isomerase B OS=Homo sapiens GN=PPIB PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.935e-24
Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 541
            GG+SI G +F DENF  KH GPG +SMAN+G  T GSQFF+ T KT WLDGKHVVFG+++EGM+VV+ +E   + S  +  K V+IADCG++
Sbjct:  114 GGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 205          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYPH_ENCCU (Peptidyl-prolyl cis-trans isomerase OS=Encephalitozoon cuniculi GN=CPR1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.935e-24
Identity = 58/93 (62.37%), Postives = 64/93 (68.82%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNK--PVVIADCGQL 541
            GG SI G KF DENF  KHT  GILSMAN G  T GSQFF+   KT+WLD KHVVFG++VEGMDVV  I K GS SG+  K   + I DCG L
Sbjct:   77 GGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVL 169          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIB_CHICK (Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.139e-24
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 541
            GG+SI G +F DENF  KH GPG +SMAN+G  T GSQFF+ T KT WLDGKHVVFG+++EGMDVV+ +E   + S  +  K V IADCG +
Sbjct:  105 GGKSIYGDRFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVTIADCGTI 196          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIB_BOVIN (Peptidyl-prolyl cis-trans isomerase B OS=Bos taurus GN=PPIB PE=1 SV=4)

HSP 1 Score: 110.538 bits (275), Expect = 5.139e-24
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTN--KPVVIADCGQL 541
            GG+SI G +F DENF  KH GPG +SMAN+G  T GSQFF+ T KT WLDGKHVVFG+++EGMDVV+ +E    + GR    K V IADCG++
Sbjct:  114 GGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVEST-KTDGRDKPLKDVTIADCGKI 205          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIB1_RHIOR (Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus oryzae GN=cyp8 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.712e-24
Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 541
            GG+SI G +FADENF  +H+ PG+LSMAN+G  T GSQFF+ T  T WLDGKHVVFG+++EGMDVV  IE   + +G  +KP   VVIADCG L
Sbjct:  104 GGKSIYGNRFADENFKLRHSTPGLLSMANAGRDTNGSQFFITTVVTPWLDGKHVVFGRVLEGMDVVTKIE--NTPTGSRSKPSVDVVIADCGLL 195          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIE_DROME (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster GN=cyp33 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.766e-24
Identity = 52/91 (57.14%), Postives = 65/91 (71.43%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GG+SI G KF DENF  KH   G LSMANSG  T GSQFF+ T KT+WLD KHVVFG ++ G +VV+ +E+ GS SG  ++ +VI  CG+L
Sbjct:  209 GGKSIYGKKFNDENFNLKHNSFGTLSMANSGANTNGSQFFICTTKTDWLDNKHVVFGHVISGAEVVRKMERCGSKSGTPSQKIVIYSCGEL 299          
The following BLAST results are available for this feature:
BLAST of CF834955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
PPIB_CRYNE1.352e-2460.87Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]
PPID_NEUCR3.013e-2459.7841 kDa peptidyl-prolyl cis-trans isomerase OS=Neur... [more]
PPIB_RAT3.013e-2457.61Peptidyl-prolyl cis-trans isomerase B OS=Rattus no... [more]
PPIA_SCHMA3.013e-2458.89Peptidyl-prolyl cis-trans isomerase OS=Schistosoma... [more]
PPIB_HUMAN3.935e-2457.61Peptidyl-prolyl cis-trans isomerase B OS=Homo sapi... [more]
CYPH_ENCCU3.935e-2462.37Peptidyl-prolyl cis-trans isomerase OS=Encephalito... [more]
PPIB_CHICK5.139e-2458.70Peptidyl-prolyl cis-trans isomerase B OS=Gallus ga... [more]
PPIB_BOVIN5.139e-2459.14Peptidyl-prolyl cis-trans isomerase B OS=Bos tauru... [more]
PPIB1_RHIOR6.712e-2460.64Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus... [more]
PPIE_DROME8.766e-2457.14Peptidyl-prolyl cis-trans isomerase E OS=Drosophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834955 ID=CF834955; Name=CF834955; organism=Citrus sinensis; type=EST; length=541bp
TTTTTTTTTTTAAAAAGGATACGGAATATAACAAGACAAGCCCCTTTTTA
TTTAAAAAGGCAGCTCATAGAAAGACATAAAAACCCTTTCATCGAGAACC
ACCACCGGAGACCCGATCCGACCCGAACAAGTAACATAGCAGGAAAATTA
GATAAAGATTAAAAGTCCTACAGACACGCCCACATAATAATAGATAACGT
AGTCAGCATCACGATCGCGATCAGACGGCTCGTGATGATGGCGATCATTA
TCATGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGGGCT
TGTTGGTCCTGCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACGACG
TCCATCCCTTCGACGAGCTGACCGAACACAACGTGCTTCCCATCGAGCCA
CTCGGTCTTGGCCGTGCGGACGAAGAACTGAGATCCGGTGGTTCCGGGTC
CGGAATTCGCCATGGAAAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAG
TTCTCATCGGCGAATTTCTAGCCGGAGATTGATTCGCCTCC
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