CF834955

Overview
NameCF834955
Unique NameCF834955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:307..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYP6_CAEEL (Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.145e-23
Identity = 55/92 (59.78%), Postives = 67/92 (72.83%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 541
            GG SI G +F DENF  +H GPG LSMAN+G  T GSQFF+ TAKT WLDGKHVVFG+++EGMDVV+ IE     +G R  + VVIA+ G +
Sbjct:   96 GGRSIYGERFEDENFKLQHYGPGWLSMANAGEDTNGSQFFITTAKTSWLDGKHVVFGKILEGMDVVREIEATPKGAGDRPIEDVVIANAGHI 187          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPID_RHIOR (Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus oryzae GN=cyp12 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.495e-23
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = -1
Query:  266 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 541
            GGESI G KF DENFV KH  P +LSMAN+GPGT GSQFF+ T  T  LDGKHVVFG++++G  VV+A+E + + S R  +  VIA CG+L+
Sbjct:   81 GGESIYGEKFEDENFVLKHEKPFLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGKVLKGKAVVRALENLETVSDRPVEDAVIAKCGELA 172          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPID_ASPFU (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus fumigatus GN=cpr6 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.495e-23
Identity = 52/92 (56.52%), Postives = 64/92 (69.57%), Query Frame = -1
Query:  266 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 541
            GGESI G KF DENF  KH  P +LSMANSGPGT GSQFF+ T  T  LDGKHVVFG+++ G  +V+ IE + + + +    V I DCG+LS
Sbjct:   89 GGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSIVRKIENMPTQADKPTTDVTIVDCGELS 180          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYP6_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizopus oryzae GN=cyp6 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.495e-23
Identity = 51/91 (56.04%), Postives = 62/91 (68.13%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GGESI G  F DENF  KH G G+LSMAN+GP T GSQFF+    T WLDG H VFGQ+V+G  V+  +E+ GS SG  +  + I DCG+L
Sbjct:   84 GGESIYGRTFKDENFTLKHKGKGLLSMANAGPNTNGSQFFITFVDTPWLDGNHTVFGQIVDGSKVLDLLEQHGSRSGMPSAKIEITDCGEL 174          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPID_EMENI (Peptidyl-prolyl cis-trans isomerase D OS=Emericella nidulans GN=cpr6 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.550e-23
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = -1
Query:  266 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 541
            GGESI G KF DENF  KH  P +LSMANSGPGT GSQFF+ T  T  LDGKHVVFG+++ G  VV+ IE + + + +    V IA+CG+L+
Sbjct:   84 GGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKIENMPTQADKPTTDVTIAECGELT 175          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPID_ASPOR (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus oryzae GN=cpr6 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.550e-23
Identity = 51/92 (55.43%), Postives = 65/92 (70.65%), Query Frame = -1
Query:  266 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 541
            GGESI G KF DENF  KH  P +LSMANSGPGT GSQFF+ T  T  LDGKHVVFG+++ G  VV+ +E + + + +  K V I +CG+L+
Sbjct:   83 GGESIYGEKFPDENFELKHDKPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKVENMNTQADKPVKDVTIVECGELT 174          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIB_MOUSE (Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 4.350e-23
Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 541
            GG+SI G +F DENF  KH GPG +SMAN+G  T GSQFF+ T KT WLDGKHVVFG+++EGMDVV+ +E   + S  +  K V+I D G++
Sbjct:  114 GGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKTDSRDKPLKDVIIVDSGKI 205          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: RBP2_BOVIN (E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 5.682e-23
Identity = 52/91 (57.14%), Postives = 62/91 (68.13%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GG SI G KF DENF  KHTGPG+LSMAN G  T  SQFF+   K E LD KHVVFG + +GMD VK IE  GS  G  ++ ++I +CGQ+
Sbjct:  995 GGRSIYGDKFEDENFDVKHTGPGLLSMANRGQDTNNSQFFITLKKAERLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVSRRIIITECGQI 1085          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIB_SCHMA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma mansoni GN=CYP PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.682e-23
Identity = 53/92 (57.61%), Postives = 65/92 (70.65%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIE-KVGSSSGRTNKPVVIADCGQL 541
            GG SI G +F DENF  +H G G LSMAN+GP T GSQFF+ T KT WLDGKHVVFG++VEGM++V+ IE +   S  R  K + IA CG +
Sbjct:  107 GGFSIYGDRFPDENFKLRHVGAGWLSMANAGPDTNGSQFFITTVKTSWLDGKHVVFGKVVEGMNIVRQIESETTDSRDRPVKSIKIASCGHI 198          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIA_STRCH (Peptidyl-prolyl cis-trans isomerase A OS=Streptomyces chrysomallus GN=ppiA PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.682e-23
Identity = 55/93 (59.14%), Postives = 67/93 (72.04%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLV--EGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GG+SI G KFADENF  KH   G+LSMAN+G  T GSQFF+ T  T WLDGKHVVFG++   + M +V+ IE +GSSSGRT+  V IA+ G L
Sbjct:   73 GGKSIYGEKFADENFQLKHDRVGLLSMANAGKNTNGSQFFITTVLTPWLDGKHVVFGEVADDDSMALVRKIEALGSSSGRTSAKVTIAESGAL 165          
The following BLAST results are available for this feature:
BLAST of CF834955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
CYP6_CAEEL1.145e-2359.78Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhab... [more]
PPID_RHIOR1.495e-2358.70Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus ... [more]
PPID_ASPFU1.495e-2356.52Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
CYP6_RHIOR1.495e-2356.04Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizop... [more]
PPID_EMENI2.550e-2356.52Peptidyl-prolyl cis-trans isomerase D OS=Emericell... [more]
PPID_ASPOR2.550e-2355.43Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
PPIB_MOUSE4.350e-2356.52Peptidyl-prolyl cis-trans isomerase B OS=Mus muscu... [more]
RBP2_BOVIN5.682e-2357.14E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos ta... [more]
PPIB_SCHMA5.682e-2357.61Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPIA_STRCH5.682e-2359.14Peptidyl-prolyl cis-trans isomerase A OS=Streptomy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834955 ID=CF834955; Name=CF834955; organism=Citrus sinensis; type=EST; length=541bp
TTTTTTTTTTTAAAAAGGATACGGAATATAACAAGACAAGCCCCTTTTTA
TTTAAAAAGGCAGCTCATAGAAAGACATAAAAACCCTTTCATCGAGAACC
ACCACCGGAGACCCGATCCGACCCGAACAAGTAACATAGCAGGAAAATTA
GATAAAGATTAAAAGTCCTACAGACACGCCCACATAATAATAGATAACGT
AGTCAGCATCACGATCGCGATCAGACGGCTCGTGATGATGGCGATCATTA
TCATGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGGGCT
TGTTGGTCCTGCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACGACG
TCCATCCCTTCGACGAGCTGACCGAACACAACGTGCTTCCCATCGAGCCA
CTCGGTCTTGGCCGTGCGGACGAAGAACTGAGATCCGGTGGTTCCGGGTC
CGGAATTCGCCATGGAAAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAG
TTCTCATCGGCGAATTTCTAGCCGGAGATTGATTCGCCTCC
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