CF834955

Overview
NameCF834955
Unique NameCF834955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:307..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYP5_CAEEL (Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 7.420e-23
Identity = 54/93 (58.06%), Postives = 66/93 (70.97%), Query Frame = -1
Query:  266 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQLS 541
            GG SI G KFADENF  KH G G LSMAN+G  T GSQFF+ T KT WLDG+HVVFG+++EGMDVV+ IE+     G R  + V+IA  G ++
Sbjct:   99 GGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIA 191          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CP20C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.420e-23
Identity = 49/70 (70.00%), Postives = 56/70 (80.00%), Query Frame = -1
Query:  332 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIE 541
            GG SI G KF DENF  KHTGPGILSMAN+GP T GSQFF+ T KT WLD KHVVFGQ++EGM +V+ +E
Sbjct:  165 GGISIYGAKFEDENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGMKLVRTLE 234          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: RBP2_MOUSE (E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.266e-22
Identity = 52/91 (57.14%), Postives = 62/91 (68.13%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GG+SI G KF DENF  KHTGPG+LSMAN G  T  SQFF+   K E LD KHVVFG + +GMD V+ IE  GS  G  ++ + I +CGQL
Sbjct: 2963 GGQSIYGDKFDDENFDLKHTGPGLLSMANYGQNTNSSQFFITLKKAEHLDFKHVVFGFVKDGMDTVRKIESFGSPKGSVSRRICITECGQL 3053          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPID_AMAMU (Peptidyl-prolyl cis-trans isomerase D OS=Amanita muscaria GN=Cyp40 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.266e-22
Identity = 54/93 (58.06%), Postives = 67/93 (72.04%), Query Frame = -1
Query:  266 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNK-PVVIADCGQLS 541
            GGESI G KF DE F   H+ P +LSMAN+GP T GSQFF+  + T  LDGKHVVFG++++G  VV+ IE   +++G   K PVVIADCGQLS
Sbjct:   82 GGESIYGEKFEDEGFPVHHSRPFLLSMANAGPNTNGSQFFITVSATPHLDGKHVVFGEVIKGRSVVRTIENNPATNGDVPKEPVVIADCGQLS 174          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIB_SCHJA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.159e-22
Identity = 53/92 (57.61%), Postives = 65/92 (70.65%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 541
            GG SI G +F DENF  KH G G LSMAN+GP T G+QFF+ T +  WLDGKHVVFG++VEGM VV+ IE + + S  R  K V IA+CG +
Sbjct:  107 GGFSIYGERFPDENFKLKHVGAGWLSMANAGPNTNGAQFFITTTQNPWLDGKHVVFGKVVEGMSVVRQIENMQTDSRDRPVKSVKIANCGHI 198          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 2.820e-22
Identity = 51/91 (56.04%), Postives = 64/91 (70.33%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GGESI G KF DENF  KH   G+LSMAN+GP T GSQFF+ T  T  LDGKHVVFGQ+++G+ V + +E V  +  +  K  VIA+CG+L
Sbjct:   94 GGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEVNGEKPAKLCVIAECGEL 184          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPID_RAT (40 kDa peptidyl-prolyl cis-trans isomerase OS=Rattus norvegicus GN=Ppid PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 3.683e-22
Identity = 51/91 (56.04%), Postives = 64/91 (70.33%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GGESI G KF DENF  KH   G+LSMAN+GP T GSQFF+ T  T  LDGKHVVFGQ+++G+ V + +E V  +  +  K  VIA+CG+L
Sbjct:   94 GGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARMLENVEVNGEKPAKLCVIAECGEL 184          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYPB_VICFA (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.683e-22
Identity = 52/93 (55.91%), Postives = 63/93 (67.74%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSS--SGRTNKPVVIADCGQL 541
            GG SI G KF DE+F  KH GPG+LSMAN+GP T GSQFF+ T  T WLD +HVVFG ++EG+DVVK +E   +S       KP  IA  G+L
Sbjct:  152 GGVSIYGSKFEDESFDLKHVGPGVLSMANAGPNTNGSQFFICTVPTPWLDNRHVVFGHVIEGLDVVKQLESQETSKLDNSPKKPCKIAKSGEL 244          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYP40_ARATH (Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.810e-22
Identity = 53/92 (57.61%), Postives = 65/92 (70.65%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVG-SSSGRTNKPVVIADCGQL 541
            GGESI G KF DENF  KH   G+LSMANSGP T GSQFF+ T +T  LDGKHVVFG++ +GM VV++IE V        ++ VVI DCG++
Sbjct:   82 GGESIYGLKFDDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVIHDCGEI 173          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: RBP2_HUMAN (E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 6.282e-22
Identity = 51/91 (56.04%), Postives = 60/91 (65.93%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GG+SI G KF DENF  KHTGPG+LSMAN G  T  SQF +   K E LD KHVVFG + +GMD VK IE  GS  G   + + I +CGQ+
Sbjct: 3134 GGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECGQI 3224          
The following BLAST results are available for this feature:
BLAST of CF834955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
CYP5_CAEEL7.420e-2358.06Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhab... [more]
CP20C_ARATH7.420e-2370.00Peptidyl-prolyl cis-trans isomerase CYP20-3, chlor... [more]
RBP2_MOUSE1.266e-2257.14E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=R... [more]
PPID_AMAMU1.266e-2258.06Peptidyl-prolyl cis-trans isomerase D OS=Amanita m... [more]
PPIB_SCHJA2.159e-2257.61Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPID_MOUSE2.820e-2256.0440 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]
PPID_RAT3.683e-2256.0440 kDa peptidyl-prolyl cis-trans isomerase OS=Ratt... [more]
CYPB_VICFA3.683e-2255.91Peptidyl-prolyl cis-trans isomerase, chloroplastic... [more]
CYP40_ARATH4.810e-2257.61Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabi... [more]
RBP2_HUMAN6.282e-2256.04E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834955 ID=CF834955; Name=CF834955; organism=Citrus sinensis; type=EST; length=541bp
TTTTTTTTTTTAAAAAGGATACGGAATATAACAAGACAAGCCCCTTTTTA
TTTAAAAAGGCAGCTCATAGAAAGACATAAAAACCCTTTCATCGAGAACC
ACCACCGGAGACCCGATCCGACCCGAACAAGTAACATAGCAGGAAAATTA
GATAAAGATTAAAAGTCCTACAGACACGCCCACATAATAATAGATAACGT
AGTCAGCATCACGATCGCGATCAGACGGCTCGTGATGATGGCGATCATTA
TCATGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGGGCT
TGTTGGTCCTGCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACGACG
TCCATCCCTTCGACGAGCTGACCGAACACAACGTGCTTCCCATCGAGCCA
CTCGGTCTTGGCCGTGCGGACGAAGAACTGAGATCCGGTGGTTCCGGGTC
CGGAATTCGCCATGGAAAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAG
TTCTCATCGGCGAATTTCTAGCCGGAGATTGATTCGCCTCC
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