CF834956

Overview
NameCF834956
Unique NameCF834956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11875 contig Csv1_Contig11875:35..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIA_BOVIN (Peptidyl-prolyl cis-trans isomerase A OS=Bos taurus GN=PPIA PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 5.795e-56
Identity = 105/171 (61.40%), Postives = 127/171 (74.27%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            M NP +FFD+ V G+P GR+  ELFAD  P+TA+NFRAL TGEKG G       YKGS F R+IPGFMCQ            KSIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTE LDGKHVVFG+V +GM++V+A+++ GS +G+T+  + IAD GQ+
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQI 164          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: CYP1_CAEEL (Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhabditis elegans GN=cyn-1 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 5.795e-56
Identity = 106/168 (63.10%), Postives = 123/168 (73.21%), Query Frame = 1
Query:   43 PKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            PK+FFD+++G +PAGR+ MELF DV P+TA+NFRALCTGEKGVG+ G  LH+KGS F R+IP FM Q            +SIYG+KF DENF  KHTGPG LSMANAGP TNGSQFF+CT  T  LDG HVVFGQV  GM VVK I+K+GS SG     V IAD G+L
Sbjct:   22 PKVFFDVSIGEEPAGRVTMELFNDVVPKTAENFRALCTGEKGVGEQGVALHFKGSKFHRIIPEFMIQGGDFTRHNGTGGESIYGNKFKDENFDLKHTGPGCLSMANAGPNTNGSQFFICTVDTPWLDGGHVVFGQVTDGMSVVKKIEKMGSRSGAPAKTVTIADCGEL 189          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIA_SAGOE (Peptidyl-prolyl cis-trans isomerase A OS=Saguinus oedipus GN=PPIA PE=3 SV=3)

HSP 1 Score: 216.083 bits (549), Expect = 9.884e-56
Identity = 105/171 (61.40%), Postives = 126/171 (73.68%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            M NP +FFD+ V G+P GR+  ELFAD  P+TA+NFRAL TGEKG G       YKGS F R+IPGFMCQ            KSIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CT KTE LDGKHVVFG+V +GM++V+A+++ GS +G+T+  + IAD GQL
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTVKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIA_CRIGR (Peptidyl-prolyl cis-trans isomerase A OS=Cricetulus griseus GN=PPIA PE=2 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 9.884e-56
Identity = 104/171 (60.82%), Postives = 128/171 (74.85%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            M NP +FFD++  G+P GR+  ELFAD  P+TA+NFRAL TGEKG G       YKGSSF R+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTE LDGKHVVFG+V +GM++V+A+++ GS +G+T+  + I+D GQL
Sbjct:    1 MVNPTVFFDISADGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQL 164          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIA_AOTTR (Peptidyl-prolyl cis-trans isomerase A OS=Aotus trivirgatus GN=PPIA PE=2 SV=3)

HSP 1 Score: 216.083 bits (549), Expect = 9.884e-56
Identity = 105/171 (61.40%), Postives = 126/171 (73.68%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            M NP +FFD+ V G+P GR+  ELFAD  P+TA+NFRAL TGEKG G       YKGS F R+IPGFMCQ            KSIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CT KTE LDGKHVVFG+V +GM++V+A+++ GS +G+T+  + IAD GQL
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTVKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIF_MOUSE (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Mus musculus GN=Ppif PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.291e-55
Identity = 105/170 (61.76%), Postives = 124/170 (72.94%), Query Frame = 1
Query:   40 NPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQLS 549
            NP ++ D+   GQP GR+++EL ADV P+TA+NFRALCTGEKG G       YKGS+F RVIP FMCQ            +SIYGS+FPDENF  KH GPG+LSMANAGP TNGSQFF+CT KT+ LDGKHVVFG V +GMDVVK I+  GS SG+T+  +VI D GQLS
Sbjct:   44 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPAFMCQAGDFTNHNGTGGRSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQLS 206          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIA_MOUSE (Peptidyl-prolyl cis-trans isomerase A OS=Mus musculus GN=Ppia PE=1 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 2.202e-55
Identity = 104/171 (60.82%), Postives = 127/171 (74.27%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            M NP +FFD+T   +P GR+  ELFAD  P+TA+NFRAL TGEKG G       YKGSSF R+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTE LDGKHVVFG+V +GM++V+A+++ GS +G+T+  + I+D GQL
Sbjct:    1 MVNPTVFFDITADDEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQL 164          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIA_FELCA (Peptidyl-prolyl cis-trans isomerase A OS=Felis catus GN=PPIA PE=2 SV=3)

HSP 1 Score: 214.542 bits (545), Expect = 2.876e-55
Identity = 104/171 (60.82%), Postives = 126/171 (73.68%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            M NP +FFD+ V G+P GR+  +LFAD  P+TA+NFRAL TGEKG G       YKGS F R+IPGFMCQ            KSIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTE LDGKHVVFG V +GM++V+A+++ GS +G+T+  + IAD GQ+
Sbjct:    1 MVNPIVFFDIAVDGEPLGRVSFDLFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGMVKEGMNIVEAMERFGSRNGKTSKKITIADCGQI 164          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIA_RABIT (Peptidyl-prolyl cis-trans isomerase A OS=Oryctolagus cuniculus GN=PPIA PE=2 SV=3)

HSP 1 Score: 213.772 bits (543), Expect = 4.905e-55
Identity = 105/171 (61.40%), Postives = 125/171 (73.10%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            M NP +FFD+ V G+P GR+  ELFAD  P+TA+NFRAL TGEKG G       YKGS F R+IPGFMCQ            KSIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTE LDGKHVVFG+V +GM +V+A++  GS +G+T+  + IA+ GQL
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFLLKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGRVKEGMSIVEAMEHFGSENGKTSKKITIANCGQL 164          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIA_BLAGE (Peptidyl-prolyl cis-trans isomerase OS=Blattella germanica GN=CYPA PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 4.905e-55
Identity = 105/171 (61.40%), Postives = 124/171 (72.51%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            M +P++FFDM+  GQP GRI+MEL +DV P+TA+NFRALCTGEKG G       YKGS F RVIP FMCQ            KSIYG+KF DENF  KHTGPGIL MANAGP TNGSQFF+ TAKT  LD +HVVFG VV+GMDVVK ++ +GS SG+TN  + + D GQ+
Sbjct:    1 MAHPRVFFDMSADGQPVGRIVMELRSDVVPKTAENFRALCTGEKGFG-------YKGSRFHRVIPNFMCQGGDFTNHNGTGGKSIYGTKFEDENFQLKHTGPGILWMANAGPNTNGSQFFITTAKTSWLDNRHVVFGSVVEGMDVVKKLESLGSQSGKTNKKIAVVDCGQI 164          
The following BLAST results are available for this feature:
BLAST of CF834956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
PPIA_BOVIN5.795e-5661.40Peptidyl-prolyl cis-trans isomerase A OS=Bos tauru... [more]
CYP1_CAEEL5.795e-5663.10Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhab... [more]
PPIA_SAGOE9.884e-5661.40Peptidyl-prolyl cis-trans isomerase A OS=Saguinus ... [more]
PPIA_CRIGR9.884e-5660.82Peptidyl-prolyl cis-trans isomerase A OS=Cricetulu... [more]
PPIA_AOTTR9.884e-5661.40Peptidyl-prolyl cis-trans isomerase A OS=Aotus tri... [more]
PPIF_MOUSE1.291e-5561.76Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIA_MOUSE2.202e-5560.82Peptidyl-prolyl cis-trans isomerase A OS=Mus muscu... [more]
PPIA_FELCA2.876e-5560.82Peptidyl-prolyl cis-trans isomerase A OS=Felis cat... [more]
PPIA_RABIT4.905e-5561.40Peptidyl-prolyl cis-trans isomerase A OS=Oryctolag... [more]
PPIA_BLAGE4.905e-5561.40Peptidyl-prolyl cis-trans isomerase OS=Blattella g... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834956 ID=CF834956; Name=CF834956; organism=Citrus sinensis; type=EST; length=574bp
TTTGTTGTTTTCTCTCCAATCAACCAATCCCCAATGCCAAACCCCAAATT
GTTCTTCGACATGACCGTCGGCGGACAGCCGGCCGGGAGGATCTTGATGG
AGCTCTTCGCCGATGTCACCCCCCGAACCGCAGATAACTTCCGCGCCCTC
TGCACCGGCGAGAAAGGCGTCGGCAAGTCCGGCAAGCCTCTCCACTACAA
AGGCTCGTCCTTCCAACGTGTGATCCCCGGATTCATGTGCCAGGGGGGAG
ACTTCACCGCCGGAAACGGAACCGGAGGCAAATCAATCTACGGCTCGAAA
TTCCCCGATGAGAACTTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTC
CATGGCGAATGCCGGACCCGGAACCAACGGATCTCAATTCTTCGTCTGTA
CGGCCAAGACCGAGAGGCTCGATGGGAAGCACGTTGTGTTCGGGCAGGTC
GTCCAAGGGATGGACGTCGTCAAGGCCATCAAGAAAGTGGGGTCCAGCTC
CGGCAGGACCAACACGCCCGTCGTGATCGCTGATTGAGGTCAATTGTCTT
AGATTTGATCATGATAATGATCGC
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