CF834956

Overview
NameCF834956
Unique NameCF834956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11875 contig Csv1_Contig11875:35..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIA_HEMPU (Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 9.251e-54
Identity = 104/171 (60.82%), Postives = 121/171 (70.76%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            M  P++FFD+   G+  GRI+MEL ADV P+TA+NFRALCTGEKG G       YKGS+F RVIPGFMCQ            KSIYG KF DENF  KHT PGILSMANAG  TNGSQFF+CTA T  LDGKHVVFG V QG+D++K ++  GS SG+T+  + IAD GQL
Sbjct:    1 MAKPQVFFDLQANGENLGRIVMELRADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPGFMCQGGDFTRHNGTGGKSIYGEKFADENFTLKHTQPGILSMANAGVNTNGSQFFICTAVTSWLDGKHVVFGAVTQGLDIIKKVESYGSDSGKTSKKITIADCGQL 164          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIA_DROME (Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.208e-53
Identity = 103/168 (61.31%), Postives = 122/168 (72.62%), Query Frame = 1
Query:   43 PKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            P++FFDMT   +P GRI+MEL +DV P+TA+NFRALCTGEKG G       YKGS F RVIP FMCQ            KSIYG+KFPDENF  KHTG GILSMANAG  TNGSQFF+CT KT  LD KHVVFG+VV+G+DVVK I+  GS SG+T+  +++A+ G L
Sbjct:   67 PRVFFDMTADNEPLGRIVMELRSDVVPKTAENFRALCTGEKGFG-------YKGSIFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFPDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLDVVKKIESYGSQSGKTSKKIIVANSGSL 227          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 2.061e-53
Identity = 101/167 (60.48%), Postives = 121/167 (72.46%), Query Frame = 1
Query:   46 KLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            K++FD+ + G+ AGR+++ LF    P+TA+NFRALCTGEKGVGKSGKPLHYKGS F R+IP FM Q            +SIYG KF DENF  KHTGPG+LSMAN+G  TNGSQFF+ T  T  LDG+HVVFG+VVQGMDVV  I+  G  SG   + VVIAD G+L
Sbjct:   33 KVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKIEAEGKQSGTPKSKVVIADSGEL 199          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: CYPX_USEUD (Peptidyl-prolyl cis-trans isomerase OS=Unspecified eudicot DB-1992 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.336e-52
Identity = 105/166 (63.25%), Postives = 124/166 (74.70%), Query Frame = 1
Query:   52 FFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSG-RTNTPVVIAD*GQL 546
            FFDMT+GGQPAGRI+MELF DV P+TA+NFRALCTGEKG+G SGK + Y+GS F RVIP FM Q            +SIYG+KF DENF+ KHT PG+LSMANAGPGTNGSQFF+ T  T  LDGKHVVFG+VV+GMDVV+ I+   +  G +  + V IA  GQL
Sbjct:    5 FFDMTIGGQPAGRIIMELFPDV-PKTAENFRALCTGEKGIGPSGKKMTYEGSVFHRVIPKFMLQGGDFTLGNGRGGESIYGAKFADENFIHKHTTPGLLSMANAGPGTNGSQFFITTVATPHLDGKHVVFGKVVEGMDVVRKIEATQTDRGDKPLSEVKIAKCGQL 169          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPI2_SYNY3 (Peptidyl-prolyl cis-trans isomerase slr1251 OS=Synechocystis sp. (strain PCC 6803) GN=slr1251 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.279e-52
Identity = 98/167 (58.68%), Postives = 124/167 (74.25%), Query Frame = 1
Query:   46 KLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            K+FFD+T+G   AGRI+MELF +VTP+TA+NFRALCTGEKGVGK+GKPLH+KGS F RVI  FM Q            +SIYG KF DENF  KH  PG+LSMANAGP TNGSQFF+       LDGKHVVFG+VV+G+++++ ++  GS SG+T   +VI+D G++
Sbjct:    4 KVFFDITIGSDTAGRIVMELFDEVTPKTAENFRALCTGEKGVGKAGKPLHFKGSHFHRVITDFMAQGGDFTRGNGTGGESIYGEKFADENFQLKHDRPGLLSMANAGPNTNGSQFFLTFVPCPWLDGKHVVFGEVVEGLEILEQLEANGSQSGQTKQAIVISDCGEI 170          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 2.976e-52
Identity = 100/164 (60.98%), Postives = 118/164 (71.95%), Query Frame = 1
Query:   22 NQSPMPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTN 513
            + S   NP ++ D+   GQP GR+++EL ADV P+TA+NFRALCTGEKG G       YKGS+F RVIP FMCQ            KSIYGS+FPDENF  KH GPG+LSMANAGP TNGSQFF+CT KT+ LDGKHVVFG V +GMDVVK I+  GS SG+T+
Sbjct:   40 SSSSSGNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTS 196          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: CYP5_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizopus oryzae GN=cyp5 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 8.659e-52
Identity = 96/168 (57.14%), Postives = 119/168 (70.83%), Query Frame = 1
Query:   43 PKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            PK+FFD+ V G+P+GR+  +LF+D  P+TA+NFRALCTGEKG G SGKPLHYKGS F R+IPGFM Q            +SIYG KF DENF  KHTG G+LSMANAGP TNGSQFF+   KT  LDG H VFGQ+V+G  V++ +++ G+ SG     V I D G++
Sbjct:    7 PKVFFDVAVNGKPSGRLTFKLFSDTVPKTAENFRALCTGEKGTGVSGKPLHYKGSHFHRIIPGFMAQGGDFTMGNGRGGESIYGHKFNDENFTLKHTGKGVLSMANAGPNTNGSQFFITFDKTPWLDGNHTVFGQLVEGNQVLEILEQHGTQSGMPTAKVEIVDCGEI 174          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPID_NEUCR (41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa GN=cyp-41 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.477e-51
Identity = 99/168 (58.93%), Postives = 121/168 (72.02%), Query Frame = 1
Query:   46 KLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQLS 549
            ++FFD+T+GG+ AGRI+ EL+ D+ P+TA+NFRALCTGEKGVGK GKPLHYKGS+F RVI  FM Q            +SIYG+KF DENF  KH  P +LSMANAGPGTNGSQFFV T  T  LDGKHVVFG+V+ G  VV+ I+ + +   +     VIAD G+LS
Sbjct:   13 RVFFDITIGGKAAGRIVFELYNDIVPKTAENFRALCTGEKGVGKLGKPLHYKGSTFHRVIKQFMIQGGDFTAGNGTGGESIYGAKFEDENFQLKHDRPFLLSMANAGPGTNGSQFFVTTVPTPHLDGKHVVFGEVLSGKSVVRQIENLKTQGDKPTKDAVIADCGELS 180          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.929e-51
Identity = 98/167 (58.68%), Postives = 118/167 (70.66%), Query Frame = 1
Query:   46 KLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            K++FD+ + G+ AGRI+M LF    P+T +NFRALCTGEKG+GK+GK LHYKGSSF R+IP FM Q            +SIYG KF DENF  KHTGPG LSMANAG  TNGSQFF+ T  T  LDG+HVVFG+VV GMDVV  ++  G+ SG   + VVI D G+L
Sbjct:   36 KVYFDVEIDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVEAEGNQSGTPKSKVVIVDSGEL 202          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPID_RHIOR (Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus oryzae GN=cyp12 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.290e-51
Identity = 98/172 (56.98%), Postives = 123/172 (71.51%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQLS 549
            M NP+++FD+T+G +P GRI+ ELF D+ P+TA+NFRALCTGEKG GKSGKPL Y+GS F R+I  FM Q            +SIYG KF DENFV KH  P +LSMANAGPGTNGSQFF+ T  T  LDGKHVVFG+V++G  VV+A++ + + S R     VIA  G+L+
Sbjct:    1 MSNPRVYFDITIGNKPEGRIVFELFKDIVPKTAENFRALCTGEKGEGKSGKPLSYQGSLFHRIIKNFMIQGGDFTAGNGTGGESIYGEKFEDENFVLKHEKPFLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGKVLKGKAVVRALENLETVSDRPVEDAVIAKCGELA 172          
The following BLAST results are available for this feature:
BLAST of CF834956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
PPIA_HEMPU9.251e-5460.82Peptidyl-prolyl cis-trans isomerase OS=Hemicentrot... [more]
PPIA_DROME1.208e-5361.31Peptidyl-prolyl cis-trans isomerase OS=Drosophila ... [more]
CP19D_ARATH2.061e-5360.48Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
CYPX_USEUD1.336e-5263.25Peptidyl-prolyl cis-trans isomerase OS=Unspecified... [more]
PPI2_SYNY32.279e-5258.68Peptidyl-prolyl cis-trans isomerase slr1251 OS=Syn... [more]
PPIF_BOVIN2.976e-5260.98Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
CYP5_RHIOR8.659e-5257.14Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizop... [more]
PPID_NEUCR1.477e-5158.9341 kDa peptidyl-prolyl cis-trans isomerase OS=Neur... [more]
CP20A_ARATH1.929e-5158.68Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
PPID_RHIOR3.290e-5156.98Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834956 ID=CF834956; Name=CF834956; organism=Citrus sinensis; type=EST; length=574bp
TTTGTTGTTTTCTCTCCAATCAACCAATCCCCAATGCCAAACCCCAAATT
GTTCTTCGACATGACCGTCGGCGGACAGCCGGCCGGGAGGATCTTGATGG
AGCTCTTCGCCGATGTCACCCCCCGAACCGCAGATAACTTCCGCGCCCTC
TGCACCGGCGAGAAAGGCGTCGGCAAGTCCGGCAAGCCTCTCCACTACAA
AGGCTCGTCCTTCCAACGTGTGATCCCCGGATTCATGTGCCAGGGGGGAG
ACTTCACCGCCGGAAACGGAACCGGAGGCAAATCAATCTACGGCTCGAAA
TTCCCCGATGAGAACTTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTC
CATGGCGAATGCCGGACCCGGAACCAACGGATCTCAATTCTTCGTCTGTA
CGGCCAAGACCGAGAGGCTCGATGGGAAGCACGTTGTGTTCGGGCAGGTC
GTCCAAGGGATGGACGTCGTCAAGGCCATCAAGAAAGTGGGGTCCAGCTC
CGGCAGGACCAACACGCCCGTCGTGATCGCTGATTGAGGTCAATTGTCTT
AGATTTGATCATGATAATGATCGC
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