CF834958

Overview
NameCF834958
Unique NameCF834958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H33_CAPAN (Histone H3.3 OS=Capsicum annuum PE=2 SV=3)

HSP 1 Score: 214.542 bits (545), Expect = 5.078e-66
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 5.078e-66
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1 
Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H33_ARATH (Histone H3.3 OS=Arabidopsis thaliana GN=HTR4 PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 5.078e-66
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 5.078e-66
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1 
Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H33A_LILLO (Histone H3.3a OS=Lilium longiflorum GN=MPH3 PE=2 SV=3)

HSP 1 Score: 210.305 bits (534), Expect = 9.414e-65
Identity = 108/112 (96.43%), Postives = 110/112 (98.21%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKST+LLIRKLPFQRLVREIAQD+K DLRFQSHAVLALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDYKADLRFQSHAVLALQEAAEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 9.414e-65
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1 
Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H3_URECA (Histone H3 OS=Urechis caupo PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.745e-63
Identity = 106/112 (94.64%), Postives = 109/112 (97.32%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 1.745e-63
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1 
Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H3_TIGCA (Histone H3 OS=Tigriopus californicus PE=3 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.745e-63
Identity = 106/112 (94.64%), Postives = 109/112 (97.32%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 1.745e-63
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1 
Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H3_PLADU (Histone H3 OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.745e-63
Identity = 106/112 (94.64%), Postives = 109/112 (97.32%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 1.745e-63
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1 
Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H3_DROME (Histone H3 OS=Drosophila melanogaster GN=His3 PE=1 SV=4)

HSP 1 Score: 206.068 bits (523), Expect = 1.745e-63
Identity = 106/112 (94.64%), Postives = 109/112 (97.32%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 1.745e-63
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1 
Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H3_DROHY (Histone H3 OS=Drosophila hydei GN=His3 PE=3 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.745e-63
Identity = 106/112 (94.64%), Postives = 109/112 (97.32%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 1.745e-63
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1 
Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H3_CHITH (Histone H3 OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.745e-63
Identity = 106/112 (94.64%), Postives = 109/112 (97.32%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 1.745e-63
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1 
Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H32_XENTR (Histone H3.2 OS=Xenopus tropicalis GN=TGas081o10.1 PE=2 SV=3)

HSP 1 Score: 206.068 bits (523), Expect = 1.745e-63
Identity = 106/112 (94.64%), Postives = 109/112 (97.32%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 1.745e-63
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1 
Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of CF834958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H33_CAPAN5.078e-6699.11Histone H3.3 OS=Capsicum annuum PE=2 SV=3[more]
H33_ARATH5.078e-6699.11Histone H3.3 OS=Arabidopsis thaliana GN=HTR4 PE=1 ... [more]
H33A_LILLO9.414e-6596.43Histone H3.3a OS=Lilium longiflorum GN=MPH3 PE=2 S... [more]
H3_URECA1.745e-6394.64Histone H3 OS=Urechis caupo PE=1 SV=2[more]
H3_TIGCA1.745e-6394.64Histone H3 OS=Tigriopus californicus PE=3 SV=2[more]
H3_PLADU1.745e-6394.64Histone H3 OS=Platynereis dumerilii PE=3 SV=2[more]
H3_DROME1.745e-6394.64Histone H3 OS=Drosophila melanogaster GN=His3 PE=1... [more]
H3_DROHY1.745e-6394.64Histone H3 OS=Drosophila hydei GN=His3 PE=3 SV=2[more]
H3_CHITH1.745e-6394.64Histone H3 OS=Chironomus thummi thummi PE=3 SV=2[more]
H32_XENTR1.745e-6394.64Histone H3.2 OS=Xenopus tropicalis GN=TGas081o10.1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834958 ID=CF834958; Name=CF834958; organism=Citrus sinensis; type=EST; length=684bp
TTTTTTTTTTTTTTTTTAAATTGCCGAAAATCCATACACGCAAGTCCCCT
ATAACCACCGATGAAGGTAAAGTGAAACAAGATAAGCTCCACAATAAACA
TTTATCTAGCAAATATCAAATGCCAAATATTCTTCAATCCATCATATCAT
TCTTTACATGTAAAAACCGAAATAAAGAAAAACTAGCAAACTAAATAGGA
AACTGACGACTACCTAAGGAATCACAAATTAAGCACGCTCGCCTCGGATT
CGCCTTGCCAGTTGAATATCCTTGGGCATAATGGTGACTCGCTTGGCATG
GATAGCACAAAGAGTTGGTGTCCTCGAACAGACCCACGAGATAAGCCTCT
GCCGCTTCCTGCAGCGCAAGAACCGCGTGGCTTTGGAACCTCAAATCTGT
CTTGAAATCTTGAGCAATTTCACGAACCAGCCGCTGGAAAGGCAGCTTGC
GGATCAAAAGCTCAGTGCTCTTTTGATATTTGCGGATTTCACGTAGGGCG
ACAGTTCCTGGACGGTAACGATGGGGCTTCTTGACTCCACCAGTTGTTGG
AGCAGATTTTCTTGCAGCCTTTGTGGCGAGCTGCTTCCTCGGAGCCTTTC
CTCCAGTTGACTTGCGCGCGGTTTGCTTCGTACGGGCCATTACTCTTTAA
TCACCAACACAAACTGCAAAATGCACAGATCTGA
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