CF834958

Overview
NameCF834958
Unique NameCF834958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H3_MARPO (Histone H3 OS=Marchantia polymorpha PE=3 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 7.732e-58
Identity = 99/112 (88.39%), Postives = 107/112 (95.54%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ E+YLV LFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVESYLVSLFEDTN-LC 111

HSP 2 Score: 49.2914 bits (116), Expect = 7.732e-58
Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = -1 
Query:  235 LCAIHAKRVTIMPKDIQLARRIRGER 312
            LCAIHAKRVTI  KDIQLARR+RGER
Sbjct:  110 LCAIHAKRVTIQSKDIQLARRLRGER 135
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H3_MAGGR (Histone H3 OS=Magnaporthe grisea GN=HHT1 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 7.732e-58
Identity = 99/112 (88.39%), Postives = 107/112 (95.54%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ E+YLV LFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVESYLVSLFEDTN-LC 111

HSP 2 Score: 49.2914 bits (116), Expect = 7.732e-58
Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = -1 
Query:  235 LCAIHAKRVTIMPKDIQLARRIRGER 312
            LCAIHAKRVTI  KDIQLARR+RGER
Sbjct:  110 LCAIHAKRVTIQSKDIQLARRLRGER 135
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H3_GIBZE (Histone H3 OS=Gibberella zeae GN=HHT1 PE=3 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 7.732e-58
Identity = 99/112 (88.39%), Postives = 107/112 (95.54%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ E+YLV LFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVESYLVSLFEDTN-LC 111

HSP 2 Score: 49.2914 bits (116), Expect = 7.732e-58
Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = -1 
Query:  235 LCAIHAKRVTIMPKDIQLARRIRGER 312
            LCAIHAKRVTI  KDIQLARR+RGER
Sbjct:  110 LCAIHAKRVTIQSKDIQLARRLRGER 135
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H3_CHAGB (Histone H3 OS=Chaetomium globosum GN=HHT1 PE=2 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 7.732e-58
Identity = 99/112 (88.39%), Postives = 107/112 (95.54%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ E+YLV LFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVESYLVSLFEDTN-LC 111

HSP 2 Score: 49.2914 bits (116), Expect = 7.732e-58
Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = -1 
Query:  235 LCAIHAKRVTIMPKDIQLARRIRGER 312
            LCAIHAKRVTI  KDIQLARR+RGER
Sbjct:  110 LCAIHAKRVTIQSKDIQLARRLRGER 135
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H31_TETTH (Histone H3 OS=Tetrahymena thermophila GN=HHT1 PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 7.732e-58
Identity = 99/112 (88.39%), Postives = 106/112 (94.64%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR+RPGTVALREIRKYQKST+LLIRKLPFQRLVR+IA +FK +LRFQS AVLALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVRDIAHEFKAELRFQSSAVLALQEAAEAYLVGLFEDTN-LC 111

HSP 2 Score: 49.6766 bits (117), Expect = 7.732e-58
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = -1 
Query:  235 LCAIHAKRVTIMPKDIQLARRIRGER 312
            LCAIHA+RVTIM KD+QLARRIRGER
Sbjct:  110 LCAIHARRVTIMTKDMQLARRIRGER 135
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H31_TETPY (Histone H3 OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 7.732e-58
Identity = 99/112 (88.39%), Postives = 106/112 (94.64%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR+RPGTVALREIRKYQKST+LLIRKLPFQRLVR+IA +FK +LRFQS AVLALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVRDIAHEFKAELRFQSSAVLALQEAAEAYLVGLFEDTN-LC 111

HSP 2 Score: 49.6766 bits (117), Expect = 7.732e-58
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = -1 
Query:  235 LCAIHAKRVTIMPKDIQLARRIRGER 312
            LCAIHA+RVTIM KD+QLARRIRGER
Sbjct:  110 LCAIHARRVTIMTKDMQLARRIRGER 135
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H3_COCIM (Histone H3 OS=Coccidioides immitis GN=HHT1 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.314e-57
Identity = 98/112 (87.50%), Postives = 106/112 (94.64%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQ+A KAARK+AP+TGGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ EAYLV LFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQIAAKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTN-LC 111

HSP 2 Score: 49.6766 bits (117), Expect = 1.314e-57
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = -1 
Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:  110 LCAIHAKRVTIQSKDIQLARRLRGERS 136
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H33_PICST (Histone H3.3 OS=Pichia stipitis GN=HHT3 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.314e-57
Identity = 99/112 (88.39%), Postives = 106/112 (94.64%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP +GGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQEA EAYLV LFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVSGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQEAVEAYLVSLFEDTN-LC 111

HSP 2 Score: 49.6766 bits (117), Expect = 1.314e-57
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = -1 
Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:  110 LCAIHAKRVTIQKKDIQLARRLRGERS 136
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H33_DEBHA (Histone H3.3 OS=Debaryomyces hansenii GN=HHT3 PE=3 SV=3)

HSP 1 Score: 193.356 bits (490), Expect = 1.314e-57
Identity = 99/112 (88.39%), Postives = 106/112 (94.64%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP +GGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQEA EAYLV LFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVSGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQEAVEAYLVSLFEDTN-LC 111

HSP 2 Score: 49.6766 bits (117), Expect = 1.314e-57
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = -1 
Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:  110 LCAIHAKRVTIQKKDIQLARRLRGERS 136
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H33L2_CAEEL (Histone H3.3-like type 2 OS=Caenorhabditis elegans GN=his-74 PE=2 SV=3)

HSP 1 Score: 188.734 bits (478), Expect = 1.314e-57
Identity = 99/112 (88.39%), Postives = 104/112 (92.86%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRK LATKAARKSA  TG VKK HR+RPGTVALREIR+YQKSTELL+RKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKALATKAARKSAIVTGSVKKVHRFRPGTVALREIRRYQKSTELLLRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTN-LC 111

HSP 2 Score: 54.299 bits (129), Expect = 1.314e-57
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = -1 
Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKD+QLARRIRGER+
Sbjct:  110 LCAIHAKRVTIMPKDMQLARRIRGERS 136
The following BLAST results are available for this feature:
BLAST of CF834958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3_MARPO7.732e-5888.39Histone H3 OS=Marchantia polymorpha PE=3 SV=3[more]
H3_MAGGR7.732e-5888.39Histone H3 OS=Magnaporthe grisea GN=HHT1 PE=3 SV=1[more]
H3_GIBZE7.732e-5888.39Histone H3 OS=Gibberella zeae GN=HHT1 PE=3 SV=3[more]
H3_CHAGB7.732e-5888.39Histone H3 OS=Chaetomium globosum GN=HHT1 PE=2 SV=... [more]
H31_TETTH7.732e-5888.39Histone H3 OS=Tetrahymena thermophila GN=HHT1 PE=1... [more]
H31_TETPY7.732e-5888.39Histone H3 OS=Tetrahymena pyriformis PE=1 SV=2[more]
H3_COCIM1.314e-5787.50Histone H3 OS=Coccidioides immitis GN=HHT1 PE=3 SV... [more]
H33_PICST1.314e-5788.39Histone H3.3 OS=Pichia stipitis GN=HHT3 PE=3 SV=1[more]
H33_DEBHA1.314e-5788.39Histone H3.3 OS=Debaryomyces hansenii GN=HHT3 PE=3... [more]
H33L2_CAEEL1.314e-5788.39Histone H3.3-like type 2 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834958 ID=CF834958; Name=CF834958; organism=Citrus sinensis; type=EST; length=684bp
TTTTTTTTTTTTTTTTTAAATTGCCGAAAATCCATACACGCAAGTCCCCT
ATAACCACCGATGAAGGTAAAGTGAAACAAGATAAGCTCCACAATAAACA
TTTATCTAGCAAATATCAAATGCCAAATATTCTTCAATCCATCATATCAT
TCTTTACATGTAAAAACCGAAATAAAGAAAAACTAGCAAACTAAATAGGA
AACTGACGACTACCTAAGGAATCACAAATTAAGCACGCTCGCCTCGGATT
CGCCTTGCCAGTTGAATATCCTTGGGCATAATGGTGACTCGCTTGGCATG
GATAGCACAAAGAGTTGGTGTCCTCGAACAGACCCACGAGATAAGCCTCT
GCCGCTTCCTGCAGCGCAAGAACCGCGTGGCTTTGGAACCTCAAATCTGT
CTTGAAATCTTGAGCAATTTCACGAACCAGCCGCTGGAAAGGCAGCTTGC
GGATCAAAAGCTCAGTGCTCTTTTGATATTTGCGGATTTCACGTAGGGCG
ACAGTTCCTGGACGGTAACGATGGGGCTTCTTGACTCCACCAGTTGTTGG
AGCAGATTTTCTTGCAGCCTTTGTGGCGAGCTGCTTCCTCGGAGCCTTTC
CTCCAGTTGACTTGCGCGCGGTTTGCTTCGTACGGGCCATTACTCTTTAA
TCACCAACACAAACTGCAAAATGCACAGATCTGA
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