CF834958 | Citrus Genome Database

Overview


Name	CF834958
Unique Name	CF834958
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	684

Libraries


Library Name	Type
Ruby Orange Ovary at Anthesis cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H31_RAT (Histone H3.1 OS=Rattus norvegicus PE=1 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 2.275e-63
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 2.275e-63
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H31_MUSPA (Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 2.275e-63
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 2.275e-63
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H31_MOUSE (Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.275e-63
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 2.275e-63
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H31_HUMAN (Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.275e-63
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 2.275e-63
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H31_BOVIN (Histone H3.1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.275e-63
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 2.275e-63
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H3L3_ARATH (Histone H3-like 3 OS=Arabidopsis thaliana GN=At1g75600 PE=2 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 2.967e-63
Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKS GGKAPR  LATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD+KTDLRFQSHAVLALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSHGGKAPRTLLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEAAEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.225 bits (134), Expect = 2.967e-63
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDVQLARRIRGERA 136

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H32_WHEAT (Histone H3.2 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.967e-63
Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 2.967e-63
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H32_PEA (Histone H3.2 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.967e-63
Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 2.967e-63
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H32_ONOVI (Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.967e-63
Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 2.967e-63
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H32_MEDSA (Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.967e-63
Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 2.967e-63
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of CF834958 vs. ExPASy Swiss-Prot

BLAST of CF834958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211


Match Name	E-value	Identity	Description
H31_RAT	2.275e-63	94.64	Histone H3.1 OS=Rattus norvegicus PE=1 SV=3	[more]
H31_MUSPA	2.275e-63	94.64	Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3	[more]
H31_MOUSE	2.275e-63	94.64	Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2	[more]
H31_HUMAN	2.275e-63	94.64	Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2	[more]
H31_BOVIN	2.275e-63	94.64	Histone H3.1 OS=Bos taurus PE=1 SV=2	[more]
H3L3_ARATH	2.967e-63	95.54	Histone H3-like 3 OS=Arabidopsis thaliana GN=At1g7...	[more]
H32_WHEAT	2.967e-63	95.54	Histone H3.2 OS=Triticum aestivum PE=1 SV=2	[more]
H32_PEA	2.967e-63	95.54	Histone H3.2 OS=Pisum sativum PE=1 SV=2	[more]
H32_ONOVI	2.967e-63	95.54	Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2	[more]
H32_MEDSA	2.967e-63	95.54	Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS02_06G23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G23, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF834958 ID=CF834958; Name=CF834958; organism=Citrus sinensis; type=EST; length=684bp
TTTTTTTTTTTTTTTTTAAATTGCCGAAAATCCATACACGCAAGTCCCCT
ATAACCACCGATGAAGGTAAAGTGAAACAAGATAAGCTCCACAATAAACA
TTTATCTAGCAAATATCAAATGCCAAATATTCTTCAATCCATCATATCAT
TCTTTACATGTAAAAACCGAAATAAAGAAAAACTAGCAAACTAAATAGGA
AACTGACGACTACCTAAGGAATCACAAATTAAGCACGCTCGCCTCGGATT
CGCCTTGCCAGTTGAATATCCTTGGGCATAATGGTGACTCGCTTGGCATG
GATAGCACAAAGAGTTGGTGTCCTCGAACAGACCCACGAGATAAGCCTCT
GCCGCTTCCTGCAGCGCAAGAACCGCGTGGCTTTGGAACCTCAAATCTGT
CTTGAAATCTTGAGCAATTTCACGAACCAGCCGCTGGAAAGGCAGCTTGC
GGATCAAAAGCTCAGTGCTCTTTTGATATTTGCGGATTTCACGTAGGGCG
ACAGTTCCTGGACGGTAACGATGGGGCTTCTTGACTCCACCAGTTGTTGG
AGCAGATTTTCTTGCAGCCTTTGTGGCGAGCTGCTTCCTCGGAGCCTTTC
CTCCAGTTGACTTGCGCGCGGTTTGCTTCGTACGGGCCATTACTCTTTAA
TCACCAACACAAACTGCAAAATGCACAGATCTGA