CF834958

Overview
NameCF834958
Unique NameCF834958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H33_PONAB (Histone H3.3 OS=Pongo abelii PE=2 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 3.233e-62
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRL REIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLAREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 3.233e-62
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1 
Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H3_STRPU (Histone H3, embryonic OS=Strongylocentrotus purpuratus PE=2 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 4.215e-62
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLV LFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVRLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 4.215e-62
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1 
Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H32_LILLO (Histone H3.2 OS=Lilium longiflorum GN=YAH3 PE=1 SV=3)

HSP 1 Score: 201.445 bits (511), Expect = 4.215e-62
Identity = 104/112 (92.86%), Postives = 107/112 (95.54%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK DLRFQS AV ALQEA+E+YLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKADLRFQSSAVAALQEASESYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 4.215e-62
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1 
Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H3L1_ARATH (Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g13370 PE=2 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 5.496e-62
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQ+ARKS GGKAP KQLATKAARKSAPTTGGVKKPHR+RPGTVALREIRKYQKSTELL RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQSARKSHGGKAPTKQLATKAARKSAPTTGGVKKPHRFRPGTVALREIRKYQKSTELLNRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN-LC 111

HSP 2 Score: 53.9138 bits (128), Expect = 5.496e-62
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = -1 
Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKD+QLARRIR ERA
Sbjct:  110 LCAIHAKRVTIMPKDVQLARRIRAERA 136
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H3_CAEEL (Histone H3 OS=Caenorhabditis elegans GN=his-2 PE=1 SV=4)

HSP 1 Score: 201.06 bits (510), Expect = 5.496e-62
Identity = 103/112 (91.96%), Postives = 107/112 (95.54%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP +GGVKKPHRYRPGTVALREIR+YQKSTELLIR+ PFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 5.496e-62
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1 
Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H31_CHLRE (Histone H3 type 1 OS=Chlamydomonas reinhardtii GN=ch3-I PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.496e-62
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKYQKSTEL+IRKLPFQRLVREIAQDFKTDLRFQS AVLALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELVIRKLPFQRLVREIAQDFKTDLRFQSQAVLALQEAAEAYLVGLFEDTN-LC 110

HSP 2 Score: 56.6102 bits (135), Expect = 5.496e-62
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1 
Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  109 LCAIHAKRVTIMPKDIQLARRIRGERA 135
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H31T_HUMAN (Histone H3.1t OS=Homo sapiens GN=HIST3H3 PE=1 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 9.345e-62
Identity = 103/112 (91.96%), Postives = 107/112 (95.54%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATK ARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRL+REIAQDFKTDLRFQS AV+ALQEA E+YLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKVARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVGLFEDTN-LC 111

HSP 2 Score: 55.0694 bits (131), Expect = 9.345e-62
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = -1 
Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LC IHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCVIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H3_GRIJA (Histone H3 OS=Griffithsia japonica PE=2 SV=3)

HSP 1 Score: 200.675 bits (509), Expect = 2.072e-61
Identity = 102/112 (91.07%), Postives = 109/112 (97.32%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP +GGVKKPHR+RPGTVALREIR++QKSTELL+RKLPFQRLVREIAQDFK+DLRFQS AVLALQEAAEAY+VGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRFRPGTVALREIRRFQKSTELLVRKLPFQRLVREIAQDFKSDLRFQSSAVLALQEAAEAYMVGLFEDTN-LC 111

HSP 2 Score: 55.0694 bits (131), Expect = 2.072e-61
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -1 
Query:  235 LCAIHAKRVTIMPKDIQLARRIRGER 312
            LCAIHAKRVTIMPKDIQLARRIRGER
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGER 135
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H33_CHLRE (Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=ch3-IV PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 7.808e-61
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVVALQEAAEAYLVGLFEDTN-LC 110

HSP 2 Score: 52.7582 bits (125), Expect = 7.808e-61
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = -1 
Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAI AKRVTIMPKDIQLARRIRGERA
Sbjct:  109 LCAITAKRVTIMPKDIQLARRIRGERA 135
[Close]
BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H3L_XENLA (Histone H3-like OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 7.808e-61
Identity = 101/112 (90.18%), Postives = 105/112 (93.75%), Query Frame = -3 
Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQL TKAA+K AP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ  AV+ALQEA+EAYLV LFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLVTKAAKKCAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQRSAVMALQEASEAYLVALFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 7.808e-61
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1 
Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of CF834958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H33_PONAB3.233e-6292.86Histone H3.3 OS=Pongo abelii PE=2 SV=3[more]
H3_STRPU4.215e-6292.86Histone H3, embryonic OS=Strongylocentrotus purpur... [more]
H32_LILLO4.215e-6292.86Histone H3.2 OS=Lilium longiflorum GN=YAH3 PE=1 SV... [more]
H3L1_ARATH5.496e-6294.64Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g1... [more]
H3_CAEEL5.496e-6291.96Histone H3 OS=Caenorhabditis elegans GN=his-2 PE=1... [more]
H31_CHLRE5.496e-6294.64Histone H3 type 1 OS=Chlamydomonas reinhardtii GN=... [more]
H31T_HUMAN9.345e-6291.96Histone H3.1t OS=Homo sapiens GN=HIST3H3 PE=1 SV=3[more]
H3_GRIJA2.072e-6191.07Histone H3 OS=Griffithsia japonica PE=2 SV=3[more]
H33_CHLRE7.808e-6194.64Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=... [more]
H3L_XENLA7.808e-6190.18Histone H3-like OS=Xenopus laevis PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834958 ID=CF834958; Name=CF834958; organism=Citrus sinensis; type=EST; length=684bp
TTTTTTTTTTTTTTTTTAAATTGCCGAAAATCCATACACGCAAGTCCCCT
ATAACCACCGATGAAGGTAAAGTGAAACAAGATAAGCTCCACAATAAACA
TTTATCTAGCAAATATCAAATGCCAAATATTCTTCAATCCATCATATCAT
TCTTTACATGTAAAAACCGAAATAAAGAAAAACTAGCAAACTAAATAGGA
AACTGACGACTACCTAAGGAATCACAAATTAAGCACGCTCGCCTCGGATT
CGCCTTGCCAGTTGAATATCCTTGGGCATAATGGTGACTCGCTTGGCATG
GATAGCACAAAGAGTTGGTGTCCTCGAACAGACCCACGAGATAAGCCTCT
GCCGCTTCCTGCAGCGCAAGAACCGCGTGGCTTTGGAACCTCAAATCTGT
CTTGAAATCTTGAGCAATTTCACGAACCAGCCGCTGGAAAGGCAGCTTGC
GGATCAAAAGCTCAGTGCTCTTTTGATATTTGCGGATTTCACGTAGGGCG
ACAGTTCCTGGACGGTAACGATGGGGCTTCTTGACTCCACCAGTTGTTGG
AGCAGATTTTCTTGCAGCCTTTGTGGCGAGCTGCTTCCTCGGAGCCTTTC
CTCCAGTTGACTTGCGCGCGGTTTGCTTCGTACGGGCCATTACTCTTTAA
TCACCAACACAAACTGCAAAATGCACAGATCTGA
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