CF834958 | Citrus Genome Database

Overview


Name	CF834958
Unique Name	CF834958
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	684

Libraries


Library Name	Type
Ruby Orange Ovary at Anthesis cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H33B_LILLO (Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2 SV=3)

HSP 1 Score: 196.823 bits (499), Expect = 1.018e-60
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPT-TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKS PT  GG+K+P RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD+KTDLRFQSHAVLALQE AEAYLVG+FEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSIPTGMGGMKRPRRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEGAEAYLVGIFEDTN-LC 112

HSP 2 Score: 56.6102 bits (135), Expect = 1.018e-60
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  111 LCAIHAKRVTIMPKDIQLARRIRGERA 137

[Close]

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H3L5_ARATH (Putative histone H3-like 5 OS=Arabidopsis thaliana GN=At5g65350 PE=5 SV=3)

HSP 1 Score: 196.823 bits (499), Expect = 2.941e-60
Identity = 102/112 (91.07%), Postives = 106/112 (94.64%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTAR STGGKAPRKQLA KAAR+SAP TGGVKKPHR+RPGTVALR+IRKYQKSTE+LIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARISTGGKAPRKQLAPKAARQSAPATGGVKKPHRFRPGTVALRDIRKYQKSTEILIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTN-LC 111

HSP 2 Score: 55.0694 bits (131), Expect = 2.941e-60
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPK+IQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKEIQLARRIRGERA 136

[Close]

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H31_LODEL (Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=HHT1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.458e-59
Identity = 102/112 (91.07%), Postives = 108/112 (96.43%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTN-LC 111

HSP 2 Score: 49.6766 bits (117), Expect = 2.458e-59
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:  110 LCAIHAKRVTIQKKDIQLARRLRGERS 136

[Close]

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H32_USTMA (Histone H3.2 OS=Ustilago maydis GN=HHT2 PE=3 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 3.204e-59
Identity = 102/109 (93.58%), Postives = 106/109 (97.25%), Query Frame = -3

Query:  314 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+ GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQE+AEAYLV LFEDTN
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQESAEAYLVSLFEDTN 109

HSP 2 Score: 46.595 bits (109), Expect = 3.204e-59
Identity = 22/26 (84.62%), Postives = 23/26 (88.46%), Query Frame = -1

Query:  235 LCAIHAKRVTIMPKDIQLARRIRGER 312
            L AIHAKRVTI PKDI LARR+RGER
Sbjct:  110 LAAIHAKRVTIQPKDIALARRLRGER 135

[Close]

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H31_SCHPO (Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=hht1 PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 4.178e-59
Identity = 102/112 (91.07%), Postives = 106/112 (94.64%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLV LFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTN-LC 111

HSP 2 Score: 50.0618 bits (118), Expect = 4.178e-59
Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIH KRVTI PKD+QLARR+RGER+
Sbjct:  110 LCAIHGKRVTIQPKDMQLARRLRGERS 136

[Close]

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H3_MORAP (Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3)

HSP 1 Score: 200.675 bits (509), Expect = 5.447e-59
Identity = 102/109 (93.58%), Postives = 105/109 (96.33%), Query Frame = -3

Query:  314 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLV LFEDTN
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEASEAYLVSLFEDTN 109

HSP 2 Score: 46.9802 bits (110), Expect = 5.447e-59
Identity = 22/26 (84.62%), Postives = 23/26 (88.46%), Query Frame = -1

Query:  235 LCAIHAKRVTIMPKDIQLARRIRGER 312
            L AIHAKRVTI PKDI LARR+RGER
Sbjct:  110 LAAIHAKRVTIQPKDIHLARRLRGER 135

[Close]

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H31_CANAL (Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 5.447e-59
Identity = 102/112 (91.07%), Postives = 108/112 (96.43%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTN-LC 111

HSP 2 Score: 48.521 bits (114), Expect = 5.447e-59
Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTI  KD+QLARR+RGER+
Sbjct:  110 LCAIHAKRVTIQKKDMQLARRLRGERS 136

[Close]

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H32_CICIN (Histone H3.2 OS=Cichorium intybus PE=2 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 5.447e-59
Identity = 101/112 (90.18%), Postives = 103/112 (91.96%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKA    A  TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEA+EAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAWNTLATATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEASEAYLVGLFEDTN-LC 111

HSP 2 Score: 55.4546 bits (132), Expect = 5.447e-59
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDMQLARRIRGERA 136

[Close]

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H3_MASBA (Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 7.102e-59
Identity = 100/112 (89.29%), Postives = 105/112 (93.75%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRK +ATKA RK+AP  GGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKAVATKA-RKTAPPVGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAYLVGLFEDTN-LC 110

HSP 2 Score: 56.6102 bits (135), Expect = 7.102e-59
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  109 LCAIHAKRVTIMPKDIQLARRIRGERA 135

[Close]

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H31_USTMA (Histone H3.1 OS=Ustilago maydis GN=HHT1 PE=3 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 2.052e-58
Identity = 101/109 (92.66%), Postives = 104/109 (95.41%), Query Frame = -3

Query:  314 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAP  GGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEAAEAYLV LFEDTN
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPAAGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAAEAYLVSLFEDTN 109

HSP 2 Score: 46.9802 bits (110), Expect = 2.052e-58
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            L AIHAKRVTI PKDI LARR+RGER+
Sbjct:  110 LAAIHAKRVTIQPKDIALARRLRGERS 136

The following BLAST results are available for this feature:

BLAST of CF834958 vs. ExPASy Swiss-Prot

BLAST of CF834958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211


Match Name	E-value	Identity	Description
H33B_LILLO	1.018e-60	91.15	Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2...	[more]
H3L5_ARATH	2.941e-60	91.07	Putative histone H3-like 5 OS=Arabidopsis thaliana...	[more]
H31_LODEL	2.458e-59	91.07	Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=...	[more]
H32_USTMA	3.204e-59	93.58	Histone H3.2 OS=Ustilago maydis GN=HHT2 PE=3 SV=3	[more]
H31_SCHPO	4.178e-59	91.07	Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=...	[more]
H3_MORAP	5.447e-59	93.58	Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3	[more]
H31_CANAL	5.447e-59	91.07	Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3...	[more]
H32_CICIN	5.447e-59	90.18	Histone H3.2 OS=Cichorium intybus PE=2 SV=3	[more]
H3_MASBA	7.102e-59	89.29	Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1	[more]
H31_USTMA	2.052e-58	92.66	Histone H3.1 OS=Ustilago maydis GN=HHT1 PE=3 SV=3	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS02_06G23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G23, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF834958 ID=CF834958; Name=CF834958; organism=Citrus sinensis; type=EST; length=684bp
TTTTTTTTTTTTTTTTTAAATTGCCGAAAATCCATACACGCAAGTCCCCT
ATAACCACCGATGAAGGTAAAGTGAAACAAGATAAGCTCCACAATAAACA
TTTATCTAGCAAATATCAAATGCCAAATATTCTTCAATCCATCATATCAT
TCTTTACATGTAAAAACCGAAATAAAGAAAAACTAGCAAACTAAATAGGA
AACTGACGACTACCTAAGGAATCACAAATTAAGCACGCTCGCCTCGGATT
CGCCTTGCCAGTTGAATATCCTTGGGCATAATGGTGACTCGCTTGGCATG
GATAGCACAAAGAGTTGGTGTCCTCGAACAGACCCACGAGATAAGCCTCT
GCCGCTTCCTGCAGCGCAAGAACCGCGTGGCTTTGGAACCTCAAATCTGT
CTTGAAATCTTGAGCAATTTCACGAACCAGCCGCTGGAAAGGCAGCTTGC
GGATCAAAAGCTCAGTGCTCTTTTGATATTTGCGGATTTCACGTAGGGCG
ACAGTTCCTGGACGGTAACGATGGGGCTTCTTGACTCCACCAGTTGTTGG
AGCAGATTTTCTTGCAGCCTTTGTGGCGAGCTGCTTCCTCGGAGCCTTTC
CTCCAGTTGACTTGCGCGCGGTTTGCTTCGTACGGGCCATTACTCTTTAA
TCACCAACACAAACTGCAAAATGCACAGATCTGA