CF834959

Overview
NameCF834959
Unique NameCF834959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig539 contig Csv1_Contig539:46..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H3_CANGA (Histone H3 OS=Candida glabrata GN=HHT1 PE=3 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 6.147e-53
Identity = 107/136 (78.68%), Postives = 115/136 (84.56%), Query Frame = 1 
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 453
            MA TKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNL AIHAKRVTI  KDI+LARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRGERS 136
[Close]
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H3_ASHGO (Histone H3 OS=Ashbya gossypii GN=HHT1 PE=3 SV=3)

HSP 1 Score: 207.223 bits (526), Expect = 6.147e-53
Identity = 107/136 (78.68%), Postives = 115/136 (84.56%), Query Frame = 1 
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 453
            MA TKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNL AIHAKRVTI  KDI+LARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRGERS 136
[Close]
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H3L_HUMAN (Histone H3-like OS=Homo sapiens PE=1 SV=3)

HSP 1 Score: 207.223 bits (526), Expect = 6.147e-53
Identity = 111/136 (81.62%), Postives = 113/136 (83.09%), Query Frame = 1 
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 453
            MA TKQTARKSTGGKAPRKQLATKAARKS P+T GVK PHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDF TDLRFQS                  EDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135
[Close]
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H33L2_CAEEL (Histone H3.3-like type 2 OS=Caenorhabditis elegans GN=his-74 PE=2 SV=3)

HSP 1 Score: 206.068 bits (523), Expect = 1.369e-52
Identity = 108/136 (79.41%), Postives = 113/136 (83.09%), Query Frame = 1 
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 453
            MA TKQTARKSTGGKAPRK LATKAARKSA  TG VKK HR+RPGTVALREIR+YQKSTELL+RKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRVTIMPKD+QLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKALATKAARKSAIVTGSVKKVHRFRPGTVALREIRRYQKSTELLLRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERS 136
[Close]
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H3L2_ARATH (Histone H3-like 2 OS=Arabidopsis thaliana GN=MGH3 PE=2 SV=3)

HSP 1 Score: 202.216 bits (513), Expect = 1.977e-51
Identity = 107/137 (78.10%), Postives = 112/137 (81.75%), Query Frame = 1 
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSA-PTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 453
            MA TKQTARKSTGGK PRK+LATKAARK+  P  GGVK+ HR+RPGTVALREIRKYQKST+LLIRKLPFQRLVREIAQDFK DLRFQSH                FEDTNLCAIHAKRVTIM KDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKGPRKELATKAARKTRRPYRGGVKRAHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDFKVDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMSKDIQLARRIRGERA 137
[Close]
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H31_TETTH (Histone H3 OS=Tetrahymena thermophila GN=HHT1 PE=1 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 1.977e-51
Identity = 103/135 (76.30%), Postives = 112/135 (82.96%), Query Frame = 1 
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 450
            MA TKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR+RPGTVALREIRKYQKST+LLIRKLPFQRLVR+IA +FK +LRFQS                 FEDTNLCAIHA+RVTIM KD+QLARRIRGER
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVRDIAHEFKAELRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQLARRIRGER 135
[Close]
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H31_TETPY (Histone H3 OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 1.977e-51
Identity = 103/135 (76.30%), Postives = 112/135 (82.96%), Query Frame = 1 
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 450
            MA TKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR+RPGTVALREIRKYQKST+LLIRKLPFQRLVR+IA +FK +LRFQS                 FEDTNLCAIHA+RVTIM KD+QLARRIRGER
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVRDIAHEFKAELRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQLARRIRGER 135
[Close]
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H3_EUPCR (Histone H3 OS=Euplotes crassus PE=3 SV=3)

HSP 1 Score: 199.904 bits (507), Expect = 9.814e-51
Identity = 102/136 (75.00%), Postives = 111/136 (81.62%), Query Frame = 1 
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 453
            MA TKQTARK+ GGKAPRK +  K+ARK+A TT G+KKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQ+FK DLRFQS                 FEDTNLCAIHAKRVTIMPKD+QLARRIRGER+
Sbjct:    1 MARTKQTARKNVGGKAPRKHIGQKSARKTASTTAGMKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQEFKGDLRFQSSAVLALQEAAEAYLVSLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERS 136
[Close]
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H3L_CAIMO (Histone H3-like OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.282e-50
Identity = 106/136 (77.94%), Postives = 108/136 (79.41%), Query Frame = 1 
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 453
            MA TKQTA KSTG KAPRKQLATKAA KSAP  GGVKKPH YRPGTVAL EI +YQKSTELLI KLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRV+IMPKDIQL RRIRGERA
Sbjct:    1 MARTKQTACKSTGRKAPRKQLATKAAHKSAPAMGGVKKPHCYRPGTVALHEIHRYQKSTELLICKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVSIMPKDIQLTRRIRGERA 136
[Close]
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H33_TETPY (Histone H3.3 OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 3.729e-50
Identity = 101/135 (74.81%), Postives = 111/135 (82.22%), Query Frame = 1 
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 450
            MA TKQTARKSTG KAPRKQLATKAARKSAP +GGVKKPH++RPGTVALREIRKYQK+T+LLIRKLPFQRLVR+IA + K D+RFQS                 FEDTNLCAIHA+RVTIM KD+QLARRIRGER
Sbjct:    1 MARTKQTARKSTGVKAPRKQLATKAARKSAPVSGGVKKPHKFRPGTVALREIRKYQKTTDLLIRKLPFQRLVRDIAMEMKNDIRFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQLARRIRGER 135
The following BLAST results are available for this feature:
BLAST of CF834959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3_CANGA6.147e-5378.68Histone H3 OS=Candida glabrata GN=HHT1 PE=3 SV=2[more]
H3_ASHGO6.147e-5378.68Histone H3 OS=Ashbya gossypii GN=HHT1 PE=3 SV=3[more]
H3L_HUMAN6.147e-5381.62Histone H3-like OS=Homo sapiens PE=1 SV=3[more]
H33L2_CAEEL1.369e-5279.41Histone H3.3-like type 2 OS=Caenorhabditis elegans... [more]
H3L2_ARATH1.977e-5178.10Histone H3-like 2 OS=Arabidopsis thaliana GN=MGH3 ... [more]
H31_TETTH1.977e-5176.30Histone H3 OS=Tetrahymena thermophila GN=HHT1 PE=1... [more]
H31_TETPY1.977e-5176.30Histone H3 OS=Tetrahymena pyriformis PE=1 SV=2[more]
H3_EUPCR9.814e-5175.00Histone H3 OS=Euplotes crassus PE=3 SV=3[more]
H3L_CAIMO1.282e-5077.94Histone H3-like OS=Cairina moschata PE=3 SV=2[more]
H33_TETPY3.729e-5074.81Histone H3.3 OS=Tetrahymena pyriformis PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834959 ID=CF834959; Name=CF834959; organism=Citrus sinensis; type=EST; length=664bp
TTCAGATCTGCCCTTTTTGCAGTTTGTGTTGGTGATTAAAGAGTAATGGC
CCCTACGAAGCAAACCGCGCGCAAGTCAACTGGAGGAAAGGCTCCGAGGA
AGCAGCTCGCCACAAAGGCTGCAAGAAAATCTGCTCCAACAACTGGTGGA
GTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTCGCCCTACGTGAAAT
CCGCAAATATCAAAAGAGCACTGAGCTTTTGATCCGCAAGCTGCCTTTCC
AGCGGCTGGTTCGTGAAATTGCTCAAGATTTCAAGACAGATTTGAGGTTC
CAAAGCCACGCGGTTCTTGCGCTGCAGGAAGCGGCAGAGGCTTATCTCCT
GGGTCTGTTCGAGGACACCAACCTTTGTGCTATCCATGCCAAGCGAGTCA
CCATTATGCCCAAGGATATTCAACTGGCAAGGCGAATCCGAGGCGAGCGT
GCTTAATTTGTGATTCCTTAGGTAGTCGTCAGTTTCCTATTTAGTTTGCT
AGTTTTTCTTTATTTCGGTTTTTACATGTAAAGAATGATATGATGGATTG
AAGAATATTTGGCATTTGATATTTGCTAGATAAATGTTTATTGTGGAGCT
TATCTTGTTTCACTTTACCTTCATCGGTGGTTTTAAGGACTTGCGTGTAT
GGATTTTCGGCAAT
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