CF834959

Overview
NameCF834959
Unique NameCF834959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H33_TETTH (Histone H3.3 OS=Tetrahymena thermophila GN=HHT3 PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 8.308e-50
Identity = 100/135 (74.07%), Postives = 111/135 (82.22%), Query Frame = 1
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 450
            MA TKQTARKSTG KAPRKQLATKAARKSAP +GGVKKPH++RPGTVALREIRKYQK+T+LLIRKLPFQRLVR+IA + K+D+RFQS                 FEDTNLCAIHA+RVTIM KD+ LARRIRGER
Sbjct:    1 MARTKQTARKSTGVKAPRKQLATKAARKSAPVSGGVKKPHKFRPGTVALREIRKYQKTTDLLIRKLPFQRLVRDIAMEMKSDIRFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDLHLARRIRGER 135          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H34_TETTH (Histone H3.4 OS=Tetrahymena thermophila GN=HHT4 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.490e-48
Identity = 97/135 (71.85%), Postives = 109/135 (80.74%), Query Frame = 1
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 450
            MA TKQTARKST  KAPRKQLA KAARKSAP +GG+KKPH++RPGTVALREIRKYQK+T+LLIRKLPFQRLVR+IA + K+D+RFQS                 FEDTNLCAIHA+RVTIM KD+ LARRIRGER
Sbjct:    1 MARTKQTARKSTSIKAPRKQLAAKAARKSAPISGGIKKPHKFRPGTVALREIRKYQKTTDLLIRKLPFQRLVRDIAMEMKSDIRFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDLHLARRIRGER 135          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H33B_DICDI (Histone H3.3 type b OS=Dictyostelium discoideum GN=H3b PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.016e-47
Identity = 98/136 (72.06%), Postives = 109/136 (80.15%), Query Frame = 1
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 453
            MA TKQTARKSTG K PRK L  K+++KS P+T G+KK HR+RPGTVALREIR+YQKS+ELLI+KLPFQRLVREIAQ+FKTDLRFQ+                 FEDTNLCAIHAKRVTIM KDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGAKVPRKHLGNKSSQKSFPSTQGLKKTHRFRPGTVALREIRRYQKSSELLIKKLPFQRLVREIAQEFKTDLRFQAAAIQALQEASEAYLVGLFEDTNLCAIHAKRVTIMVKDIQLARRIRGERA 136          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H33A_DICDI (Histone H3.3 type a OS=Dictyostelium discoideum GN=H3a PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.016e-47
Identity = 100/139 (71.94%), Postives = 108/139 (77.70%), Query Frame = 1
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAP---TTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 453
            MA TKQTARKSTG K PRK + +K A K  P   ++GGVKK HR+RPGTVALREIRKYQKST+LLIRKLPFQRLVREIAQ+FKTDLRFQS                 FEDTNLCAIHAKRVTIMPKDI LARRIRGER+
Sbjct:    1 MARTKQTARKSTGAKVPRKHIGSKQAHKQTPVSSSSGGVKKVHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQEFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHLARRIRGERS 139          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H3_YARLI (Histone H3 OS=Yarrowia lipolytica GN=HHT1 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.326e-47
Identity = 103/139 (74.10%), Postives = 109/139 (78.42%), Query Frame = 1
Query:   46 MAPTKQT--ARKSTGGKAPRKQLATKAARKSAP---TTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 447
            MA TK T  ARK TGGKAPRKQ+ +KAARKSA    T+GGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRVTI  KDI LARR+RGE
Sbjct:    1 MARTKSTVIARKVTGGKAPRKQIGSKAARKSAAPSNTSGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIHLARRLRGE 139          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H3L_MOUSE (Putative histone H3-like OS=Mus musculus PE=5 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 3.267e-46
Identity = 101/136 (74.26%), Postives = 106/136 (77.94%), Query Frame = 1
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 453
            MA TKQTARKST GKAPRKQLATKAA KSAP+TGGVKK HRYRP TVAL EIR+Y  STELLI KLPFQRLV+EIAQDFKTDLRFQS                 FEDTNLCAIHAK VT++PKDIQLA  I GERA
Sbjct:    1 MAHTKQTARKSTCGKAPRKQLATKAAXKSAPSTGGVKKSHRYRPDTVALLEIRRYH-STELLIHKLPFQRLVQEIAQDFKTDLRFQSAAIGALQEASEANRVGLFEDTNLCAIHAKCVTVIPKDIQLAHSILGERA 135          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H33L3_CAEEL (Putative histone H3.3-like type 3 OS=Caenorhabditis elegans GN=his-69 PE=5 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.241e-45
Identity = 94/123 (76.42%), Postives = 100/123 (81.30%), Query Frame = 1
Query:   82 GGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 450
            GGKAPRKQLATKAARK+A   G VKKPHR+RPGTVALREIR+YQKST+LL+RKLPFQRLVREIAQD K DLRFQS                 FEDTNLCAIHAKRVTIMPKD+QLARRIRGER
Sbjct:    4 GGKAPRKQLATKAARKNAIVVGAVKKPHRFRPGTVALREIRRYQKSTDLLLRKLPFQRLVREIAQDVKQDLRFQSAAIQALQEASEYFLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGER 126          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H33C_DICDI (Histone H3.3 type c OS=Dictyostelium discoideum GN=H3c PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.047e-45
Identity = 94/136 (69.12%), Postives = 106/136 (77.94%), Query Frame = 1
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 453
            MA TKQTARKSTG K PRK L++K++  S P    +KK HR+RPGTVALREIR+YQKS++LLI+KLPFQRLVREIAQ+FKTDLRFQ+                 FEDTNLCAIHAKRVTIM KDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGAKVPRKHLSSKSSFPSKPVNEVLKKTHRFRPGTVALREIRRYQKSSDLLIKKLPFQRLVREIAQEFKTDLRFQAAAIEALQEATEAYLVGLFEDTNLCAIHAKRVTIMVKDIQLARRIRGERA 136          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H34_STYLE (Histone H3-4 (Fragment) OS=Stylonychia lemnae GN=H3-4 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.268e-39
Identity = 83/111 (74.77%), Postives = 87/111 (78.38%), Query Frame = 1
Query:   79 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMP 411
            TG KAPRK LA KAARK+AP  GGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIA D+K+DLRFQS                 FEDTNLCAIHA RVTIMP
Sbjct:    2 TGAKAPRKALANKAARKTAPADGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIASDYKSDLRFQSSAVAAIQEAAEAYMVGLFEDTNLCAIHAGRVTIMP 112          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H3_GUITH (Histone H3 OS=Guillardia theta PE=3 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 5.052e-39
Identity = 86/134 (64.18%), Postives = 97/134 (72.39%), Query Frame = 1
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 447
            MA TKQTARK+ GG     +++ K A+        +KK HRY+PGTVALREIRKYQKST LLIRKLPFQRLVRE+AQD+K+DLRFQ+                 FEDTNLCAIHAKRVTIMPKDI LARRIRGE
Sbjct:    1 MARTKQTARKTVGGDI-NSRISEKRAKSDNSKNIDLKKVHRYKPGTVALREIRKYQKSTNLLIRKLPFQRLVRELAQDYKSDLRFQNSAVLALQEASESYLVNLFEDTNLCAIHAKRVTIMPKDIYLARRIRGE 133          
The following BLAST results are available for this feature:
BLAST of CF834959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H33_TETTH8.308e-5074.07Histone H3.3 OS=Tetrahymena thermophila GN=HHT3 PE... [more]
H34_TETTH3.490e-4871.85Histone H3.4 OS=Tetrahymena thermophila GN=HHT4 PE... [more]
H33B_DICDI1.016e-4772.06Histone H3.3 type b OS=Dictyostelium discoideum GN... [more]
H33A_DICDI1.016e-4771.94Histone H3.3 type a OS=Dictyostelium discoideum GN... [more]
H3_YARLI1.326e-4774.10Histone H3 OS=Yarrowia lipolytica GN=HHT1 PE=3 SV=... [more]
H3L_MOUSE3.267e-4674.26Putative histone H3-like OS=Mus musculus PE=5 SV=2[more]
H33L3_CAEEL1.241e-4576.42Putative histone H3.3-like type 3 OS=Caenorhabditi... [more]
H33C_DICDI8.047e-4569.12Histone H3.3 type c OS=Dictyostelium discoideum GN... [more]
H34_STYLE2.268e-3974.77Histone H3-4 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H3_GUITH5.052e-3964.18Histone H3 OS=Guillardia theta PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834959 ID=CF834959; Name=CF834959; organism=Citrus sinensis; type=EST; length=664bp
TTCAGATCTGCCCTTTTTGCAGTTTGTGTTGGTGATTAAAGAGTAATGGC
CCCTACGAAGCAAACCGCGCGCAAGTCAACTGGAGGAAAGGCTCCGAGGA
AGCAGCTCGCCACAAAGGCTGCAAGAAAATCTGCTCCAACAACTGGTGGA
GTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTCGCCCTACGTGAAAT
CCGCAAATATCAAAAGAGCACTGAGCTTTTGATCCGCAAGCTGCCTTTCC
AGCGGCTGGTTCGTGAAATTGCTCAAGATTTCAAGACAGATTTGAGGTTC
CAAAGCCACGCGGTTCTTGCGCTGCAGGAAGCGGCAGAGGCTTATCTCCT
GGGTCTGTTCGAGGACACCAACCTTTGTGCTATCCATGCCAAGCGAGTCA
CCATTATGCCCAAGGATATTCAACTGGCAAGGCGAATCCGAGGCGAGCGT
GCTTAATTTGTGATTCCTTAGGTAGTCGTCAGTTTCCTATTTAGTTTGCT
AGTTTTTCTTTATTTCGGTTTTTACATGTAAAGAATGATATGATGGATTG
AAGAATATTTGGCATTTGATATTTGCTAGATAAATGTTTATTGTGGAGCT
TATCTTGTTTCACTTTACCTTCATCGGTGGTTTTAAGGACTTGCGTGTAT
GGATTTTCGGCAAT
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