CF834959
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H31_STYLE (Histone H3-1 (Fragment) OS=Stylonychia lemnae GN=H3-1 PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 4.277e-38 Identity = 82/114 (71.93%), Postives = 91/114 (79.82%), Query Frame = 1 Query: 76 STGGKAPRKQLATKAARKSAPT--TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMP 411 +TG KAPR+QLA KAARK+A +GGVKKPHR+RPGTVALREIRK+QKSTELLIRKLPFQRLVREIAQ++K+DLRFQS FEDTNLCAIHAKRVTIMP Sbjct: 1 NTGAKAPREQLANKAARKTAQVAQSGGVKKPHRFRPGTVALREIRKFQKSTELLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMP 114
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H33L1_CAEEL (Histone H3.3-like type 1 OS=Caenorhabditis elegans GN=his-70 PE=2 SV=3) HSP 1 Score: 157.532 bits (397), Expect = 5.586e-38 Identity = 85/127 (66.93%), Postives = 94/127 (74.02%), Query Frame = 1 Query: 46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQL 426 MA TK TARKS GGKAPRK LATKAARK P G VKK RYRP + AL+EIRKYQKSTELL+RKLPFQRLVRE+AQ+ ++RFQS FEDTNLCAIHAKRVTIMPKD+Q+ Sbjct: 1 MARTKHTARKSFGGKAPRKSLATKAARKVFPVDGQVKK--RYRPSSNALKEIRKYQKSTELLVRKLPFQRLVREVAQEIMPNVRFQSAAIQALHEAAEAYLIGLFEDTNLCAIHAKRVTIMPKDMQV 125
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H36_STYLE (Histone H3-6 (Fragment) OS=Stylonychia lemnae GN=H3-6 PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 9.527e-38 Identity = 81/114 (71.05%), Postives = 90/114 (78.95%), Query Frame = 1 Query: 76 STGGKAPRKQLATKAARKS--APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMP 411 +TGGKAPRK +A K A+KS A TGGVKKPHR+RPGTVALREIR++QKSTELLIRKLPFQRLVREIAQ++K+DLRFQS FEDTNLCAIHAKRVTIMP Sbjct: 1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMP 114
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H3L4_ARATH (Histone H3-like 4 OS=Arabidopsis thaliana GN=At5g12910 PE=2 SV=3) HSP 1 Score: 156.377 bits (394), Expect = 1.244e-37 Identity = 83/135 (61.48%), Postives = 99/135 (73.33%), Query Frame = 1 Query: 46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 450 MA + QTARK+TGGKAP A + + S P +KKP+RY+PGTVALREIRKYQK+T+L+IRKLPFQRLV+EIAQ K DLRFQ+ FEDTNLCA+HAKR TIMPKDIQLA+R+RG+R Sbjct: 1 MARSNQTARKATGGKAPH--FAMRVWQHSTPP---LKKPYRYKPGTVALREIRKYQKTTDLVIRKLPFQRLVKEIAQSLKADLRFQTGAVSALQEAAEAFMVGMFEDTNLCAMHAKRSTIMPKDIQLAKRLRGDR 130
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H38_STYLE (Histone H3-8 (Fragment) OS=Stylonychia lemnae GN=H3-8 PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 2.122e-37 Identity = 80/113 (70.80%), Postives = 86/113 (76.11%), Query Frame = 1 Query: 76 STGGKAPRKQLATKAARKSA-PTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMP 411 +TG KAPRK LA KAARK+A P G+KKPHRYRPGTVALREIRKYQKST+LLIRKLPFQRLVREIA ++K DLRFQS FEDTNLCAIH KRVTIMP Sbjct: 1 NTGAKAPRKHLANKAARKTAAPANAGIKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIASEYKNDLRFQSSAVLALQEAAEAYMIGLFEDTNLCAIHGKRVTIMP 113
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H33_STYLE (Histone H3-3 (Fragment) OS=Stylonychia lemnae GN=H3-3 PE=3 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 2.772e-37 Identity = 81/114 (71.05%), Postives = 88/114 (77.19%), Query Frame = 1 Query: 76 STGGKAPRKQLATKAARKS--APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMP 411 +TGGKAPRK +A K A+KS A TGGVKKPHR+RPGTVALREIR++QKSTELLIRKLPFQRLVREIA +FK DLRFQS FEDTNLCAIHAKRVTIMP Sbjct: 1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIASEFKNDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMP 114
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H35_STYLE (Histone H3-5 (Fragment) OS=Stylonychia lemnae GN=H3-5 PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 3.620e-37 Identity = 81/114 (71.05%), Postives = 88/114 (77.19%), Query Frame = 1 Query: 76 STGGKAPRKQLATKAARKSAPTTG--GVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMP 411 +TG KAPRKQLA KAARKS GVKKPHR+RPGTVALREIR++QKSTELLIRKLPFQRLVREIAQ++K+DLRFQS FEDTNLCAIHAKRVTIMP Sbjct: 1 NTGAKAPRKQLANKAARKSTNVNAVSGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP 114
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H39_STYLE (Histone H3-2 (Fragment) OS=Stylonychia lemnae GN=H3-2 PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.065e-36 Identity = 80/114 (70.18%), Postives = 87/114 (76.32%), Query Frame = 1 Query: 76 STGGKAPRKQLATKAARKS--APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMP 411 +TGGKAPRK +A K A+KS A TGGVKKPHR+RPGTVALREIR++QKSTELLIRKLPFQRLVREIA +FK DLRFQS FEDTNL AIHAKRVTIMP Sbjct: 1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIASEFKNDLRFQSSAVLALQEASEAYLVGLFEDTNLAAIHAKRVTIMP 114
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H37_STYLE (Histone H3-7 (Fragment) OS=Stylonychia lemnae GN=H3-7 PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.065e-36 Identity = 80/114 (70.18%), Postives = 87/114 (76.32%), Query Frame = 1 Query: 76 STGGKAPRKQLATKAARKS--APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMP 411 +TGGKAPRK +A K A+KS A TGGVKKPHR+RPGTVALREIR++QKSTELLIRKLPFQRLVREIA +FK DLRFQS FEDTNL AIHAKRVTIMP Sbjct: 1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIASEFKNDLRFQSSAVLALQEASEAYLVGLFEDTNLAAIHAKRVTIMP 114
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H3L_BOVIN (Histone H3-like OS=Bos taurus PE=2 SV=3) HSP 1 Score: 141.739 bits (356), Expect = 3.172e-33 Identity = 71/87 (81.61%), Postives = 76/87 (87.36%), Query Frame = 1 Query: 46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 306 MA TK+TA KSTGGK PRKQL +AA KSAP+T G+ KPHRYRPGTVALREIR YQKST LIRKLPFQRLVREIAQDFKTDL+FQS Sbjct: 1 MARTKRTAYKSTGGKVPRKQLVIEAAGKSAPSTSGMTKPHRYRPGTVALREIRPYQKSTHFLIRKLPFQRLVREIAQDFKTDLKFQS 87 The following BLAST results are available for this feature:
BLAST of CF834959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 211
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834959 ID=CF834959; Name=CF834959; organism=Citrus sinensis; type=EST; length=664bpback to top |