CF834959

Overview
NameCF834959
Unique NameCF834959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig539 contig Csv1_Contig539:46..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H31_ENCCU (Histone H3.1 OS=Encephalitozoon cuniculi GN=HHT1 PE=3 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.740e-31
Identity = 72/135 (53.33%), Postives = 90/135 (66.67%), Query Frame = 1
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKS-APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIR 441
            MA TKQ+ARK+TGGKAPRKQL+ K+ARK  +P +    K  RYRPG+VAL+EIR+YQKST+ LIR+LPFQR  R + ++    TD+RFQ                  FED  LCA HAKRVT+ PKDI L  ++R
Sbjct:    1 MARTKQSARKTTGGKAPRKQLSAKSARKGVSPASSAGAKKSRYRPGSVALKEIRRYQKSTDFLIRRLPFQRACRSVVKECSNATDIRFQGPALASIQEALEVYLVGLFEDAMLCAYHAKRVTVFPKDISLVLKLR 135          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H3L3_LILLO (Histone H3-like 3 OS=Lilium longiflorum GN=leH3 PE=2 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 2.513e-30
Identity = 80/156 (51.28%), Postives = 89/156 (57.05%), Query Frame = 1
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTT-----------------------GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRG 444
            MA  K  AR STGGKAPRKQLA KA RK+AP T                        GVK+PHRYRPG + LREIRKY+K+    I KLPF RLVR+I Q+ K  LRFQS                 FED    AIHAKRVT++PKDIQLAR I G
Sbjct:    1 MARMKLNARMSTGGKAPRKQLAYKAVRKAAPPTIGVKLPNSYRPGDQTVCKPAPPTDGVKEPHRYRPGKMGLREIRKYKKNARFFISKLPFHRLVRKITQNLKAHLRFQSTAMPAPEEVSEAYLVKLFED----AIHAKRVTLVPKDIQLARCIGG 152          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H3_ENTHI (Histone H3 OS=Entamoeba histolytica GN=H3 PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 6.844e-28
Identity = 76/136 (55.88%), Postives = 84/136 (61.76%), Query Frame = 1
Query:   46 MAPTK-QTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 450
            MA TK    R S       K +A KAA+K        KK  R  PG VAL EI+  Q+STELL+RK PFQ LVREIAQ  K+DLRFQS                 FEDTNLCAIHAKR+TIMPKD+QLARRIRGER
Sbjct:    1 MARTKGHIERPSNKSAKAVKNVAFKAAKKMLSKDSTKKK--RAHPGAVALTEIKVLQRSTELLLRKAPFQALVREIAQVSKSDLRFQSAAISALQEAAEAYLVGLFEDTNLCAIHAKRITIMPKDMQLARRIRGER 134          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H33_HORVU (Histone H3.3 (Fragment) OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.991e-27
Identity = 64/80 (80.00%), Postives = 64/80 (80.00%), Query Frame = 1
Query:  214 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 453
            KSTELLIRKLPFQRLVREIAQDFKTDLRFQSH                FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 80          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: CENPA_CANAL (Histone H3-like centromeric protein CSE4 OS=Candida albicans GN=CSE4 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.093e-25
Identity = 68/106 (64.15%), Postives = 74/106 (69.81%), Query Frame = 1
Query:  139 TTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDF---KTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 447
            T   VKK  RYRPGT ALREIR+YQKST+LLIRKLPF RLVREI+ DF      LR+QS+                 EDTNLCAIHAKRVTIM KDIQLARRIRG+
Sbjct:  104 TVPRVKK--RYRPGTKALREIRQYQKSTDLLIRKLPFARLVREISLDFVGPSYGLRWQSNAILALQEASESFLIHLLEDTNLCAIHAKRVTIMQKDIQLARRIRGQ 207          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: CENPA_NEUCR (Histone H3-like centromeric protein cse-4 OS=Neurospora crassa GN=cse-4 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.427e-25
Identity = 68/137 (49.64%), Postives = 85/137 (62.04%), Query Frame = 1
Query:   49 APTKQTARKSTGGKAP--RKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK---TDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRG 444
            A +K+ A   T    P  R++    + +   P   G K+  RYRPGT+AL+EIR YQ++T+LL+ KLPF RLVREIA  F+    ++R+QS                 FEDTNLCAIHAKRVTIM KDIQLARRIRG
Sbjct:   13 AVSKKAAAVPTPKATPPGRRKSRASSVQPGDPVPQGKKR--RYRPGTLALKEIRNYQRTTDLLVAKLPFARLVREIAMQFRPMDEEMRWQSQAILALQEAAEAFLVHLFEDTNLCAIHAKRVTIMQKDIQLARRIRG 147          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H3_LEIIN (Histone H3 OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.250e-25
Identity = 67/136 (49.26%), Postives = 84/136 (61.76%), Query Frame = 1
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR-YRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 450
            M+ TK+TAR        ++ + +K ++K+     GVK+ HR +RPGT A+REIRK+QKST LLI+  PFQRLVR + +  K  LRFQS                   DTNL  IHAKRVTI PKDIQLA R+RGER
Sbjct:    1 MSRTKETARA-------KRTITSKKSKKAPSGASGVKRSHRRWRPGTCAIREIRKFQKSTSLLIQCAPFQRLVRGVERQ-KEGLRFQSSAIMALQEATEAYIVSLMADTNLACIHAKRVTIQPKDIQLALRLRGER 128          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: CENPA_DANRE (Histone H3-like centromeric protein A OS=Danio rerio GN=cenpa PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.061e-24
Identity = 58/112 (51.79%), Postives = 72/112 (64.29%), Query Frame = 1
Query:  112 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD-LRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRG 444
            ++  R S P+    +K H++RPGT AL EIRKYQKST LL+RK PF RLVRE+ Q F  + + +Q +                F D NLCAIHAKRVT+ P+DIQLARRIRG
Sbjct:   30 SRTRRHSGPSGSSPRKKHKFRPGTRALMEIRKYQKSTGLLLRKAPFSRLVREVCQMFSREHMMWQGYALMALQEAAEAFMVRLFSDANLCAIHAKRVTLFPRDIQLARRIRG 141          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: CENPA_SCHPO (Histone H3-like centromeric protein cnp1 OS=Schizosaccharomyces pombe GN=cnp1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.590e-24
Identity = 61/99 (61.62%), Postives = 71/99 (71.72%), Query Frame = 1
Query:  166 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD----FKTD--LRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRG 444
            RYRPGT ALREIRKYQ+ST+LLI++LPF R+VREI+ +    F TD  LR+QS                 FEDTNLCAIHAKRVTIM +D+QLARRIRG
Sbjct:   21 RYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: CENPA_PICFA (Histone H3-like centromeric protein CSE4 OS=Pichia farinosa GN=CSE4 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.995e-24
Identity = 59/96 (61.46%), Postives = 70/96 (72.92%), Query Frame = 1
Query:  166 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDF---KTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRG 444
            RYRPGT ALREIR+YQ+S+ELLIRKLPF RLV+E+A+++      +R+QS+                 EDTNLCAIHAKRVTIM KDIQLARRIRG
Sbjct:   61 RYRPGTKALREIRRYQRSSELLIRKLPFARLVKEVAENYIGADYGIRWQSNAVLALQEACEAFLVHLLEDTNLCAIHAKRVTIMQKDIQLARRIRG 156          
The following BLAST results are available for this feature:
BLAST of CF834959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H31_ENCCU1.740e-3153.33Histone H3.1 OS=Encephalitozoon cuniculi GN=HHT1 P... [more]
H3L3_LILLO2.513e-3051.28Histone H3-like 3 OS=Lilium longiflorum GN=leH3 PE... [more]
H3_ENTHI6.844e-2855.88Histone H3 OS=Entamoeba histolytica GN=H3 PE=3 SV=... [more]
H33_HORVU1.991e-2780.00Histone H3.3 (Fragment) OS=Hordeum vulgare PE=3 SV... [more]
CENPA_CANAL1.093e-2564.15Histone H3-like centromeric protein CSE4 OS=Candid... [more]
CENPA_NEUCR1.427e-2549.64Histone H3-like centromeric protein cse-4 OS=Neuro... [more]
H3_LEIIN9.250e-2549.26Histone H3 OS=Leishmania infantum PE=2 SV=1[more]
CENPA_DANRE2.061e-2451.79Histone H3-like centromeric protein A OS=Danio rer... [more]
CENPA_SCHPO4.590e-2461.62Histone H3-like centromeric protein cnp1 OS=Schizo... [more]
CENPA_PICFA5.995e-2461.46Histone H3-like centromeric protein CSE4 OS=Pichia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834959 ID=CF834959; Name=CF834959; organism=Citrus sinensis; type=EST; length=664bp
TTCAGATCTGCCCTTTTTGCAGTTTGTGTTGGTGATTAAAGAGTAATGGC
CCCTACGAAGCAAACCGCGCGCAAGTCAACTGGAGGAAAGGCTCCGAGGA
AGCAGCTCGCCACAAAGGCTGCAAGAAAATCTGCTCCAACAACTGGTGGA
GTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTCGCCCTACGTGAAAT
CCGCAAATATCAAAAGAGCACTGAGCTTTTGATCCGCAAGCTGCCTTTCC
AGCGGCTGGTTCGTGAAATTGCTCAAGATTTCAAGACAGATTTGAGGTTC
CAAAGCCACGCGGTTCTTGCGCTGCAGGAAGCGGCAGAGGCTTATCTCCT
GGGTCTGTTCGAGGACACCAACCTTTGTGCTATCCATGCCAAGCGAGTCA
CCATTATGCCCAAGGATATTCAACTGGCAAGGCGAATCCGAGGCGAGCGT
GCTTAATTTGTGATTCCTTAGGTAGTCGTCAGTTTCCTATTTAGTTTGCT
AGTTTTTCTTTATTTCGGTTTTTACATGTAAAGAATGATATGATGGATTG
AAGAATATTTGGCATTTGATATTTGCTAGATAAATGTTTATTGTGGAGCT
TATCTTGTTTCACTTTACCTTCATCGGTGGTTTTAAGGACTTGCGTGTAT
GGATTTTCGGCAAT
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