CF834959

Overview
NameCF834959
Unique NameCF834959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig539 contig Csv1_Contig539:46..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H3L_ENCCU (Histone H3-like protein OS=Encephalitozoon cuniculi GN=ECU09_0450 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.278e-23
Identity = 62/135 (45.93%), Postives = 85/135 (62.96%), Query Frame = 1
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTG---GVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIR 441
            M+ TKQTA K+ GGKAPRK ++ K    S P++G    + K  R++ G +AL+EIRKYQKST+LLIRK PFQR+VR++ +  +  +RFQ+                  ED   C +HAKRVT+MPKDI L  +I+
Sbjct:    1 MSRTKQTASKALGGKAPRKGISAK----SIPSSGCSPAMPKRTRFKAGALALKEIRKYQKSTDLLIRKRPFQRMVRDLCKG-REGVRFQASAIVAFQEAVENFLTSLMEDAYRCVLHAKRVTLMPKDICLVYKIK 130          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: CENPA_YARLI (Histone H3-like centromeric protein CSE4 OS=Yarrowia lipolytica GN=CSE4 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.290e-22
Identity = 62/125 (49.60%), Postives = 76/125 (60.80%), Query Frame = 1
Query:   82 GGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDF----KTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRG 444
            GG  P  Q       +   TT  + KP RY+PG  AL+EIR+YQ+ TELLI KLPF R+VRE+A ++      +L++QS                 FED NLCAIHAKRVTIM KD+QLARRIRG
Sbjct:   21 GGLHPLGQTRKTLPGERRDTTQKITKP-RYKPGQKALKEIRRYQRGTELLIAKLPFARVVREVALNYLGSEYGNLQWQSMALLALQEAAEAFLVHLFEDVNLCAIHAKRVTIMQKDMQLARRIRG 144          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: CENPA_ASHGO (Histone H3-like centromeric protein CSE4 OS=Ashbya gossypii GN=CSE4 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.572e-22
Identity = 59/139 (42.45%), Postives = 78/139 (56.12%), Query Frame = 1
Query:   40 RVMAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 447
            RV+    + A   +     R++       +   T    KKP RYRP  VAL+EIR+YQ+STELLI ++PF RLV+E+   F T    +R+QS                  E TNL A+HAKRVT+M KD+QLARRIRG+
Sbjct:   64 RVVERVAEPAAAESRADGAREEERPARPARPRETRRIAKKPQRYRPSDVALQEIRRYQRSTELLISRMPFARLVKEVTDQFTTVDQQMRWQSMAILALQEASEAYIVGLLEHTNLLALHAKRVTVMRKDMQLARRIRGQ 202          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: CENPA_XENTR (Histone H3-like centromeric protein A OS=Xenopus tropicalis GN=cenpa PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.132e-21
Identity = 64/138 (46.38%), Postives = 78/138 (56.52%), Query Frame = 1
Query:   40 RVMAPTKQTARKSTGG-KAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF--QSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRG 444
            RV  P   T+ +S G   AP ++ A +A  K            R+RPGT AL EIRKYQKSTELLIRK PF RLVRE+   +   L +  QS                 FED+ LC++HAKRVT+  +DIQLARRIRG
Sbjct:   18 RVSPPLPTTSTRSPGRPSAPEQRKAPRATPKK-----------RFRPGTRALMEIRKYQKSTELLIRKAPFSRLVREVCMTYACGLNYSWQSMALMALQEASEAFLVRLFEDSYLCSLHAKRVTLYVQDIQLARRIRG 144          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: CENPA_XENLA (Histone H3-like centromeric protein A OS=Xenopus laevis GN=cenpa PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.637e-21
Identity = 65/137 (47.45%), Postives = 79/137 (57.66%), Query Frame = 1
Query:   40 RVMAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF--QSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRG 444
            RV  P   T+R  T  + P  Q   +A+R S       KK  R+RPGT AL EIRKYQKSTELLIRK PF RLVRE+   +   + +  QS                 FED+ LC++HAKRVT+  +DIQLARRIRG
Sbjct:   18 RVSPPLPTTSR--TSPRRPHAQQQRRASRASP------KK--RFRPGTRALMEIRKYQKSTELLIRKAPFSRLVREVCMTYACGMNYNWQSMALMALQEASEAFLVRLFEDSYLCSLHAKRVTLYVQDIQLARRIRG 144          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: CENPA_YEAST (Histone H3-like centromeric protein CSE4 OS=Saccharomyces cerevisiae GN=CSE4 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.996e-19
Identity = 51/97 (52.58%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  166 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 447
            +Y P  +AL EIRKYQ+ST+LLI K+PF RLV+E+  +F T   DLR+QS                  E TNL A+HAKR+TIM KD+QLARRIRG+
Sbjct:  131 KYTPSELALYEIRKYQRSTDLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQ 227          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: CENPA_KLULA (Histone H3-like centromeric protein CSE4 OS=Kluyveromyces lactis GN=CSE4 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.584e-19
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  166 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 447
            RY+P  +AL EIRKYQ+ST+LLI ++PF RLV+E+   F T+   LR+QS                  E TNL A+HAKR+TIM KD+QLARRIRG+
Sbjct:   86 RYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRIRGQ 182          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: CENPA_KLUMA (Histone H3-like centromeric protein CSE4 OS=Kluyveromyces marxianus GN=CSE4 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.905e-19
Identity = 49/97 (50.52%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  166 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 447
            +Y+P  +AL EIRKYQ+ST+LLI ++PF RLV+E+   F +D   LR+QS                  E TNL A+HAKR+TIM KD+QLARRIRG+
Sbjct:   94 KYKPSDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFASDEEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRIRGQ 190          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: CENPA_TETTH (Histone H3-like centromeric protein CNA1 OS=Tetrahymena thermophila GN=CNA1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.095e-17
Identity = 52/123 (42.28%), Postives = 73/123 (59.35%), Query Frame = 1
Query:   97 RKQLATKAARKSAPT---TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDF--KTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 450
            R + +TK  R+S+     +   K   R+RPG  AL+++R+Y ++  LLIRKLPFQRL+REI+     +  LR+ S                 FED N CA+HAKRVT+M KD+ LA RIRG++
Sbjct:   54 RNKASTKKKRESSGEKYESARDKVIRRFRPGDNALKQLRQYNQTPSLLIRKLPFQRLIREISTRMTEEDSLRWTSFALVLLQTVVEDYMVSFFEDANACALHAKRVTLMSKDLALAARIRGQK 176          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: CENPA_CHICK (Histone H3-like centromeric protein A OS=Gallus gallus GN=CENPA PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.095e-17
Identity = 48/98 (48.98%), Postives = 61/98 (62.24%), Query Frame = 1
Query:  157 KPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRG 444
            +  RYRPG  ALREIR+YQ ST LL+R+ PF R+VREI   F    D R+Q+                  ED  LC++HA+RVT+ PKD+QLARR+RG
Sbjct:   28 RARRYRPGQRALREIRRYQSSTALLLRRQPFARVVREICLLFTRGVDYRWQAMALLALQEAAEAFLVHLLEDAYLCSLHARRVTLYPKDLQLARRLRG 125          
The following BLAST results are available for this feature:
BLAST of CF834959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3L_ENCCU2.278e-2345.93Histone H3-like protein OS=Encephalitozoon cunicul... [more]
CENPA_YARLI3.290e-2249.60Histone H3-like centromeric protein CSE4 OS=Yarrow... [more]
CENPA_ASHGO9.572e-2242.45Histone H3-like centromeric protein CSE4 OS=Ashbya... [more]
CENPA_XENTR2.132e-2146.38Histone H3-like centromeric protein A OS=Xenopus t... [more]
CENPA_XENLA3.637e-2147.45Histone H3-like centromeric protein A OS=Xenopus l... [more]
CENPA_YEAST1.996e-1952.58Histone H3-like centromeric protein CSE4 OS=Saccha... [more]
CENPA_KLULA7.584e-1951.55Histone H3-like centromeric protein CSE4 OS=Kluyve... [more]
CENPA_KLUMA9.905e-1950.52Histone H3-like centromeric protein CSE4 OS=Kluyve... [more]
CENPA_TETTH1.095e-1742.28Histone H3-like centromeric protein CNA1 OS=Tetrah... [more]
CENPA_CHICK1.095e-1748.98Histone H3-like centromeric protein A OS=Gallus ga... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834959 ID=CF834959; Name=CF834959; organism=Citrus sinensis; type=EST; length=664bp
TTCAGATCTGCCCTTTTTGCAGTTTGTGTTGGTGATTAAAGAGTAATGGC
CCCTACGAAGCAAACCGCGCGCAAGTCAACTGGAGGAAAGGCTCCGAGGA
AGCAGCTCGCCACAAAGGCTGCAAGAAAATCTGCTCCAACAACTGGTGGA
GTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTCGCCCTACGTGAAAT
CCGCAAATATCAAAAGAGCACTGAGCTTTTGATCCGCAAGCTGCCTTTCC
AGCGGCTGGTTCGTGAAATTGCTCAAGATTTCAAGACAGATTTGAGGTTC
CAAAGCCACGCGGTTCTTGCGCTGCAGGAAGCGGCAGAGGCTTATCTCCT
GGGTCTGTTCGAGGACACCAACCTTTGTGCTATCCATGCCAAGCGAGTCA
CCATTATGCCCAAGGATATTCAACTGGCAAGGCGAATCCGAGGCGAGCGT
GCTTAATTTGTGATTCCTTAGGTAGTCGTCAGTTTCCTATTTAGTTTGCT
AGTTTTTCTTTATTTCGGTTTTTACATGTAAAGAATGATATGATGGATTG
AAGAATATTTGGCATTTGATATTTGCTAGATAAATGTTTATTGTGGAGCT
TATCTTGTTTCACTTTACCTTCATCGGTGGTTTTAAGGACTTGCGTGTAT
GGATTTTCGGCAAT
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