CF834959

Overview
NameCF834959
Unique NameCF834959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig539 contig Csv1_Contig539:46..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: HCP3L_CAEBR (Histone H3-like centromeric protein cpar-1 OS=Caenorhabditis briggsae GN=cpar-1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 48/101 (47.52%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  151 VKKPH--RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREI--AQDFKT-DLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRI 438
            V K H  ++RPG  AL EIRKYQKST++LI+K PF RLV EI   Q +K+ D R ++                 FE + L   HAKRVT+MP DIQL RR+
Sbjct:  239 VTKTHNRKFRPGQKALAEIRKYQKSTDMLIQKAPFVRLVHEIIREQTYKSQDYRIRADALMALQEAAEAFMVEMFEGSVLICNHAKRVTLMPTDIQLYRRL 339          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H3L2_LILLO (Histone H3-like 2 OS=Lilium longiflorum GN=gcH3 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.137e-13
Identity = 47/89 (52.81%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKS-APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH 309
            MA  K TAR STGGKAPRKQLA+KA RK+  P T GVK+P     G                  RKLPFQ LVR+I QD KT LRF++H
Sbjct:    1 MARMKHTARMSTGGKAPRKQLASKALRKAPPPPTKGVKQPTTTTSGKWRFARFH----------RKLPFQGLVRKIWQDLKTHLRFKNH 79          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H32_TETTR (Histone H3.2 (Fragment) OS=Tetrahymena tropicalis PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 168
            MA TKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H32_TETSO (Histone H3.2 (Fragment) OS=Tetrahymena sonneborni PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 168
            MA TKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H32_TETRO (Histone H3.2 (Fragment) OS=Tetrahymena rostrata PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 168
            MA TKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H32_TETPR (Histone H3.2 (Fragment) OS=Tetrahymena paravorax PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 168
            MA TKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H32_TETPI (Histone H3.2 (Fragment) OS=Tetrahymena pigmentosa PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 168
            MA TKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H32_TETPA (Histone H3.2 (Fragment) OS=Tetrahymena patula PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 168
            MA TKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H32_TETNI (Histone H3.2 (Fragment) OS=Tetrahymena nippisingi PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 168
            MA TKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H32_TETNA (Histone H3.2 (Fragment) OS=Tetrahymena nanneyi PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 168
            MA TKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
The following BLAST results are available for this feature:
BLAST of CF834959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
HCP3L_CAEBR1.253e-1347.52Histone H3-like centromeric protein cpar-1 OS=Caen... [more]
H3L2_LILLO2.137e-1352.81Histone H3-like 2 OS=Lilium longiflorum GN=gcH3 PE... [more]
H32_TETTR2.791e-1387.80Histone H3.2 (Fragment) OS=Tetrahymena tropicalis ... [more]
H32_TETSO2.791e-1387.80Histone H3.2 (Fragment) OS=Tetrahymena sonneborni ... [more]
H32_TETRO2.791e-1387.80Histone H3.2 (Fragment) OS=Tetrahymena rostrata PE... [more]
H32_TETPR2.791e-1387.80Histone H3.2 (Fragment) OS=Tetrahymena paravorax P... [more]
H32_TETPI2.791e-1387.80Histone H3.2 (Fragment) OS=Tetrahymena pigmentosa ... [more]
H32_TETPA2.791e-1387.80Histone H3.2 (Fragment) OS=Tetrahymena patula PE=3... [more]
H32_TETNI2.791e-1387.80Histone H3.2 (Fragment) OS=Tetrahymena nippisingi ... [more]
H32_TETNA2.791e-1387.80Histone H3.2 (Fragment) OS=Tetrahymena nanneyi PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834959 ID=CF834959; Name=CF834959; organism=Citrus sinensis; type=EST; length=664bp
TTCAGATCTGCCCTTTTTGCAGTTTGTGTTGGTGATTAAAGAGTAATGGC
CCCTACGAAGCAAACCGCGCGCAAGTCAACTGGAGGAAAGGCTCCGAGGA
AGCAGCTCGCCACAAAGGCTGCAAGAAAATCTGCTCCAACAACTGGTGGA
GTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTCGCCCTACGTGAAAT
CCGCAAATATCAAAAGAGCACTGAGCTTTTGATCCGCAAGCTGCCTTTCC
AGCGGCTGGTTCGTGAAATTGCTCAAGATTTCAAGACAGATTTGAGGTTC
CAAAGCCACGCGGTTCTTGCGCTGCAGGAAGCGGCAGAGGCTTATCTCCT
GGGTCTGTTCGAGGACACCAACCTTTGTGCTATCCATGCCAAGCGAGTCA
CCATTATGCCCAAGGATATTCAACTGGCAAGGCGAATCCGAGGCGAGCGT
GCTTAATTTGTGATTCCTTAGGTAGTCGTCAGTTTCCTATTTAGTTTGCT
AGTTTTTCTTTATTTCGGTTTTTACATGTAAAGAATGATATGATGGATTG
AAGAATATTTGGCATTTGATATTTGCTAGATAAATGTTTATTGTGGAGCT
TATCTTGTTTCACTTTACCTTCATCGGTGGTTTTAAGGACTTGCGTGTAT
GGATTTTCGGCAAT
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