CF834959

Overview
NameCF834959
Unique NameCF834959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H32_TETMI (Histone H3.2 (Fragment) OS=Tetrahymena mimbres PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 168
            MA TKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H32_TETMA (Histone H3.2 (Fragment) OS=Tetrahymena malaccensis PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 168
            MA TKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H32_TETLE (Histone H3.2 (Fragment) OS=Tetrahymena leucophrys PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 168
            MA TKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H32_TETHY (Histone H3.2 (Fragment) OS=Tetrahymena hyperangularis PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 168
            MA TKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H32_TETFU (Histone H3.2 (Fragment) OS=Tetrahymena furgasoni PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 168
            MA TKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H32_TETEL (Histone H3.2 (Fragment) OS=Tetrahymena elliotti PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 168
            MA TKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H32_TETCU (Histone H3.2 (Fragment) OS=Tetrahymena caudata PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 168
            MA TKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H32_TETCA (Histone H3.2 (Fragment) OS=Tetrahymena capricornis PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 168
            MA TKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H32_TETAU (Histone H3.2 (Fragment) OS=Tetrahymena australis PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 168
            MA TKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CF834959 vs. ExPASy Swiss-Prot
Match: H32_TETAM (Histone H3.2 (Fragment) OS=Tetrahymena americanus PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   46 MAPTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 168
            MA TKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
The following BLAST results are available for this feature:
BLAST of CF834959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H32_TETMI2.791e-1387.80Histone H3.2 (Fragment) OS=Tetrahymena mimbres PE=... [more]
H32_TETMA2.791e-1387.80Histone H3.2 (Fragment) OS=Tetrahymena malaccensis... [more]
H32_TETLE2.791e-1387.80Histone H3.2 (Fragment) OS=Tetrahymena leucophrys ... [more]
H32_TETHY2.791e-1387.80Histone H3.2 (Fragment) OS=Tetrahymena hyperangula... [more]
H32_TETFU2.791e-1387.80Histone H3.2 (Fragment) OS=Tetrahymena furgasoni P... [more]
H32_TETEL2.791e-1387.80Histone H3.2 (Fragment) OS=Tetrahymena elliotti PE... [more]
H32_TETCU2.791e-1387.80Histone H3.2 (Fragment) OS=Tetrahymena caudata PE=... [more]
H32_TETCA2.791e-1387.80Histone H3.2 (Fragment) OS=Tetrahymena capricornis... [more]
H32_TETAU2.791e-1387.80Histone H3.2 (Fragment) OS=Tetrahymena australis P... [more]
H32_TETAM2.791e-1387.80Histone H3.2 (Fragment) OS=Tetrahymena americanus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834959 ID=CF834959; Name=CF834959; organism=Citrus sinensis; type=EST; length=664bp
TTCAGATCTGCCCTTTTTGCAGTTTGTGTTGGTGATTAAAGAGTAATGGC
CCCTACGAAGCAAACCGCGCGCAAGTCAACTGGAGGAAAGGCTCCGAGGA
AGCAGCTCGCCACAAAGGCTGCAAGAAAATCTGCTCCAACAACTGGTGGA
GTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTCGCCCTACGTGAAAT
CCGCAAATATCAAAAGAGCACTGAGCTTTTGATCCGCAAGCTGCCTTTCC
AGCGGCTGGTTCGTGAAATTGCTCAAGATTTCAAGACAGATTTGAGGTTC
CAAAGCCACGCGGTTCTTGCGCTGCAGGAAGCGGCAGAGGCTTATCTCCT
GGGTCTGTTCGAGGACACCAACCTTTGTGCTATCCATGCCAAGCGAGTCA
CCATTATGCCCAAGGATATTCAACTGGCAAGGCGAATCCGAGGCGAGCGT
GCTTAATTTGTGATTCCTTAGGTAGTCGTCAGTTTCCTATTTAGTTTGCT
AGTTTTTCTTTATTTCGGTTTTTACATGTAAAGAATGATATGATGGATTG
AAGAATATTTGGCATTTGATATTTGCTAGATAAATGTTTATTGTGGAGCT
TATCTTGTTTCACTTTACCTTCATCGGTGGTTTTAAGGACTTGCGTGTAT
GGATTTTCGGCAAT
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