CF834961

Overview
NameCF834961
Unique NameCF834961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834961 vs. ExPASy Swiss-Prot
Match: GLRX2_HUMAN (Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=GLRX2 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.093e-19
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = -3
Query:  260 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKATELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 529
            QET+S N VV+FSKT C +C   K+LF  + V +K  EL+    G+  Q AL + TG++TVP +F+ G  IGG   T  LH+EGKL+PL+
Sbjct:   61 QETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 150          
BLAST of CF834961 vs. ExPASy Swiss-Prot
Match: GRS12_ARATH (Monothiol glutaredoxin-S12, chloroplastic OS=Arabidopsis thaliana GN=GRXS12 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 4.663e-19
Identity = 49/92 (53.26%), Postives = 63/92 (68.48%), Query Frame = -3
Query:  251 TVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKATELNK-ESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEA 523
            TV+ N VVV+SKT+C +   VK LF+ L V     EL++  S+GS +Q+ L + TGQ TVPNVFIGGKHIGGC  T  LH +G+L  +L EA
Sbjct:   81 TVAENPVVVYSKTWCSYSSQVKSLFKSLQVEPLVVELDQLGSEGSQLQNVLEKITGQYTVPNVFIGGKHIGGCSDTLQLHNKGELEAILAEA 172          
BLAST of CF834961 vs. ExPASy Swiss-Prot
Match: GLRX2_PONAB (Glutaredoxin-2, mitochondrial OS=Pongo abelii GN=GLRX2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.663e-19
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = -3
Query:  260 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKATELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 529
            QET+S N VV+FSKT C +C   K+LF+ + V +K  EL+    G+  Q AL + TG +TVP +F+ G  IGG   T  LH+EGKL+PL+
Sbjct:   58 QETISDNCVVIFSKTSCSYCTMAKKLFRDMNVNYKVVELDLLEYGNQFQDALYKMTGGRTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 147          
BLAST of CF834961 vs. ExPASy Swiss-Prot
Match: GLRX2_RAT (Glutaredoxin-2, mitochondrial OS=Rattus norvegicus GN=Glrx2 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 7.953e-19
Identity = 42/90 (46.67%), Postives = 60/90 (66.67%), Query Frame = -3
Query:  260 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKATELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 529
            QET+S+N VV+FSK+ C +C   K++F  + V +K  EL+    GS  Q AL + TG++TVP +F+ G  IGG   T  LH+EGKL+PL+
Sbjct:   54 QETISNNCVVIFSKSSCSYCSMAKKIFHDMNVNYKVVELDMVEYGSQFQEALYKMTGERTVPRIFVNGIFIGGAADTHRLHKEGKLLPLV 143          
BLAST of CF834961 vs. ExPASy Swiss-Prot
Match: TRXR3_MOUSE (Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.039e-18
Identity = 41/97 (42.27%), Postives = 60/97 (61.86%), Query Frame = -3
Query:  245 KAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKATELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGA 535
            + ++ +  N V++FSK++CP    VKELF  LGV +   EL++  DG+ +Q  L E + QKTVPN+F+   H+GGCD T   H+ G L  LL +  A
Sbjct:  112 RLRDLIEGNRVMIFSKSYCPHSTRVKELFSSLGVVYNILELDQVDDGASVQEVLTEISNQKTVPNIFVNKVHVGGCDRTFQAHQNGLLQKLLQDDSA 208          
BLAST of CF834961 vs. ExPASy Swiss-Prot
Match: GRS10_ORYSJ (Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. japonica GN=GRXS10 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.039e-18
Identity = 44/93 (47.31%), Postives = 64/93 (68.82%), Query Frame = -3
Query:  254 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKATELNK-ESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTE 529
            + T++ N VV++SK++C + + VK LF+++GV     EL++  + G  +Q  L   TGQ TVPNVFIGGKHIGGC  T  LHR+G+L  +L+E
Sbjct:   64 KRTLADNPVVIYSKSWCSYSMEVKALFKRIGVQPHVIELDQLGAQGPQLQKVLERLTGQSTVPNVFIGGKHIGGCTDTVKLHRKGELATMLSE 156          
BLAST of CF834961 vs. ExPASy Swiss-Prot
Match: GRXC5_ARATH (Glutaredoxin-C5, chloroplastic OS=Arabidopsis thaliana GN=GRXC5 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.772e-18
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = -3
Query:  251 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKATELNKES-DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEA 529
            ++TV+ N+VV++SKT+C +C  VK LF++LGV     EL++    G  +Q  L   TGQ TVPNVF+ GKHIGGC  T  L+R+G L  +L EA
Sbjct:   74 RKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEA 167          
BLAST of CF834961 vs. ExPASy Swiss-Prot
Match: GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.022e-18
Identity = 41/94 (43.62%), Postives = 62/94 (65.96%), Query Frame = -3
Query:  248 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKATELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAG 529
            ++T+SS+ +V+FSK++CP+C   K +F++L       EL++  DG  IQ+AL E  G++TVP VFI GKH+GG D T   +  G+L  LL  +G
Sbjct:   36 KKTISSHKIVIFSKSYCPYCKKAKSVFRELDQVPYVVELDEREDGWSIQTALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLGVSG 129          
BLAST of CF834961 vs. ExPASy Swiss-Prot
Match: TRXR3_HUMAN (Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.559e-17
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = -3
Query:  254 VSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKATELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTE 520
            +  + VV+FSK++CP    VKELF  LGV     EL++  DG+ +Q  L+E T QKTVPN+F+   H+GGCD T   ++ G L  LL E
Sbjct:  174 IERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQE 262          
BLAST of CF834961 vs. ExPASy Swiss-Prot
Match: GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.166e-16
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = -3
Query:  260 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKATELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 529
            Q  + SN +V+FSK++CP+C+  K +F QL       EL++  DG  IQ  L E+ G++TVP VF+ GKHIGG D   A    G+L  LL
Sbjct:   38 QNAILSNKIVIFSKSYCPYCLRSKRIFSQLKEEPFVVELDQREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLGAALESGQLQKLL 127          
The following BLAST results are available for this feature:
BLAST of CF834961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
GLRX2_HUMAN2.093e-1947.78Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=G... [more]
GRS12_ARATH4.663e-1953.26Monothiol glutaredoxin-S12, chloroplastic OS=Arabi... [more]
GLRX2_PONAB4.663e-1947.78Glutaredoxin-2, mitochondrial OS=Pongo abelii GN=G... [more]
GLRX2_RAT7.953e-1946.67Glutaredoxin-2, mitochondrial OS=Rattus norvegicus... [more]
TRXR3_MOUSE1.039e-1842.27Thioredoxin reductase 3 (Fragment) OS=Mus musculus... [more]
GRS10_ORYSJ1.039e-1847.31Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. ... [more]
GRXC5_ARATH1.772e-1848.94Glutaredoxin-C5, chloroplastic OS=Arabidopsis thal... [more]
GRXC4_ARATH3.022e-1843.62Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 P... [more]
TRXR3_HUMAN2.559e-1746.07Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 ... [more]
GRXC3_ARATH2.166e-1644.44Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834961 ID=CF834961; Name=CF834961; organism=Citrus sinensis; type=EST; length=594bp
TTTTTTTTTTTTTTTTTAAGTAAAAATGACTCTACATGGATATACTACCA
TTTAAAATCTGATAAAATTCATACAGATTTCAACATAAAACATAAACTGA
ACAAAAAAGTGCATTGGAAATTACTCAAATAAGCATAATTTCATGTTTAA
TTCAGACAGATTAAGCACTACCAACACATTCTTTATTTATTACTAGAATT
AACAGGGAGACAATAGCCATCCATCAGGCAGCTGTCTTGGCAACAGCTCC
AGCTTCAGTGAGCAGAGGAACCAGCTTCCCTTCCCTGTGCAGTGCAGTAG
TTGAATCGCAGCCACCAATGTGTTTCCCTCCGATGAAGACATTTGGAACA
GTTTTCTGTCCAGTCCACTCAGCTAGAGCTGATTGAATGTCACTTCCATC
ACTTTCTTTGTTCAGTTCGGTGGCCTTGAAAGTGACTCCGAGTTGCTGAA
ACAGCTCTTTGACACTCACGCAGAACGGACAAAACGTTTTGCTGAAAACG
ACGACGGAATTGGAGGAAACGGTTTCCTGGGCCTTGGGCAAAGCCATTTC
TGTGTCTTCTTTGTCTTTGATTCGAAATCTCACAAACCCTAAAT
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