CF834965

Overview
NameCF834965
Unique NameCF834965
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7791 contig Csv1_Contig7791:91..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834965 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.225e-66
Identity = 123/133 (92.48%), Postives = 129/133 (96.99%), Query Frame = -3 
Query:  353 NVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 751
            NVAVKDLKRG+VASNSKDDPA+EAANFT+QVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E+ TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETF  YPPLGRFAVRDMRQTVAVGVIK+VEKKDP
Sbjct:  302 NVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434
[Close]
BLAST of CF834965 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.017e-65
Identity = 121/133 (90.98%), Postives = 130/133 (97.74%), Query Frame = -3 
Query:  353 NVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 751
            NV+VKDLKRG+VASNSKDDPA+ AA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKELEKEPKFLKNGDAGMVKM+PTKPMVVETF++YPPLGRFAVR MRQTVAVGVIK VEKKDP
Sbjct:  302 NVSVKDLKRGYVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKELEKEPKFLKNGDAGMVKMLPTKPMVVETFAEYPPLGRFAVRVMRQTVAVGVIKAVEKKDP 434
[Close]
BLAST of CF834965 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.554e-64
Identity = 119/133 (89.47%), Postives = 127/133 (95.49%), Query Frame = -3 
Query:  353 NVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 751
            NVAVKDLKRG+VASNSKDDPA+EAANFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKF+E+ TKIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAVGVIK+VEKK+P
Sbjct:  302 NVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEP 434
[Close]
BLAST of CF834965 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.554e-64
Identity = 119/133 (89.47%), Postives = 127/133 (95.49%), Query Frame = -3 
Query:  353 NVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 751
            NVAVKDLKRG+VASNSKDDPA+EAANFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKF+E+ TKIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAVGVIK+VEKK+P
Sbjct:  302 NVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEP 434
[Close]
BLAST of CF834965 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 208.764 bits (530), Expect = 2.649e-53
Identity = 98/132 (74.24%), Postives = 117/132 (88.64%), Query Frame = -3 
Query:  356 NVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 751
            NV+VKD++RG V  N+K+DP +EAA+FT+QVII+NHPGQIGNGYAPVLDCHTSHIA KF+E+ +KIDRRSGKELEK PK +K+GDA +V+M+P KPM VE F+DY PLGRFAVRDMRQTVAVG+IK V KKD
Sbjct:  302 NVSVKDIRRGNVCGNTKNDPPKEAADFTAQVIILNHPGQIGNGYAPVLDCHTSHIACKFAEIESKIDRRSGKELEKAPKSIKSGDAAIVRMVPQKPMCVEVFNDYAPLGRFAVRDMRQTVAVGIIKAVTKKD 433
[Close]
BLAST of CF834965 vs. ExPASy Swiss-Prot
Match: EF1A_ABSGL (Elongation factor 1-alpha OS=Absidia glauca GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.460e-53
Identity = 98/132 (74.24%), Postives = 119/132 (90.15%), Query Frame = -3 
Query:  356 NVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 751
            NV+VKD++RG V S+SK+DPA+EA +FT+QVI++NHPGQIG GYAPVLDCHT+HIA KF+EL+ KIDRRSGK+LE  PKF+K+GD+ +VKMIP+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D
Sbjct:  312 NVSVKDIRRGNVCSDSKNDPAKEAGSFTAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 443
[Close]
BLAST of CF834965 vs. ExPASy Swiss-Prot
Match: EF1A2_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-2 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.519e-53
Identity = 97/132 (73.48%), Postives = 119/132 (90.15%), Query Frame = -3 
Query:  356 NVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 751
            NV+VKD++RG V S+SK+DPA+E+A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFSEL+ KIDRRSGK++E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D
Sbjct:  312 NVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 443
[Close]
BLAST of CF834965 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.519e-53
Identity = 97/132 (73.48%), Postives = 119/132 (90.15%), Query Frame = -3 
Query:  356 NVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 751
            NV+VKD++RG V S+SK+DPA+E+A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFSEL+ KIDRRSGK++E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D
Sbjct:  312 NVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 443
[Close]
BLAST of CF834965 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.708e-53
Identity = 95/132 (71.97%), Postives = 121/132 (91.67%), Query Frame = -3 
Query:  356 NVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 751
            NV+VKD++RG VAS+SK+DPA+EAA+F +QVI++NHPGQIG GYAPVLDCHT+HIA KFSEL+ KIDRR+GK +E  PKF+K+GDA +VK++P+KPM VE++++YPPLGRFAVRDMRQTVAVGVIK+VEK +
Sbjct:  314 NVSVKDIRRGDVASDSKNDPAKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFSELIEKIDRRTGKTMEAAPKFVKSGDAAIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGVIKSVEKTE 445
[Close]
BLAST of CF834965 vs. ExPASy Swiss-Prot
Match: EF1A0_XENLA (Elongation factor 1-alpha, somatic form OS=Xenopus laevis GN=eef1as PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.315e-52
Identity = 101/131 (77.10%), Postives = 115/131 (87.79%), Query Frame = -3 
Query:  359 NVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 751
            NV+VKD++RG VA +SK+DP  EA +FT+QVII+NHPGQIG GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK VEKK
Sbjct:  314 NVSVKDVRRGNVAGDSKNDPPMEAGSFTAQVIILNHPGQIGAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVEKK 444
The following BLAST results are available for this feature:
BLAST of CF834965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A2_DAUCA1.225e-6692.48Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A1_DAUCA3.017e-6590.98Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A2_HORVU2.554e-6489.47Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A1_HORVU2.554e-6489.47Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A_TRYBB2.649e-5374.24Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A_ABSGL3.460e-5374.24Elongation factor 1-alpha OS=Absidia glauca GN=TEF... [more]
EF1A2_RHIRA4.519e-5373.48Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A1_RHIRA4.519e-5373.48Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A_PIRIN7.708e-5371.97Elongation factor 1-alpha OS=Piriformospora indica... [more]
EF1A0_XENLA1.315e-5277.10Elongation factor 1-alpha, somatic form OS=Xenopus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834965 ID=CF834965; Name=CF834965; organism=Citrus sinensis; type=EST; length=753bp
CCCCGAGTTTTTTTTTTTTTTTTGACCATCAAAAACAGTCGCCCATTCTC
TCACCGCTAAATTTAATACAACACCTACAAAATATATGAGCACCGACTAA
ATTTTCAAAATCGAGCACTAACGGCTAATCTTGAAACAAAATGTTTGACA
TCCAAAAACTGGTTTATCAACTTACCAAAAAAAAACTCTGATATAAAACC
AAATTCAGAGAATTAAAATGAAGTCCCGTAAAACAAACTAAAACACGACA
AAAATAGCATAAACAGAGAAAATAAAAGCTAACTATAGCAGATAGATCCC
AAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGGTGACCTTGGCACCT
GTTGGATCCTTCTTTTCAACATTCTTAATCACACCAACAGCAACAGTCTG
ACGCATGTCCCTAACGGCAAAACGACCAAGAGGTGGGTAGTCAGAGAAGG
TTTCAACAACCATGGGCTTGGTGGGAATCATCTTAACCATTCCAGCATCT
CCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCT
ATCAATCTTCGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGTGT
GGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTGGCCAGGGTGGTTC
ATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCCTGGCTGGATCATC
CTTCGAGTTGGAAGCAACAAAACCACGCTTGAGATCCTTGACAGCAACGT
TCT
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