CF834978

Overview
NameCF834978
Unique NameCF834978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6745 contig Csv1_Contig6745:1028..1769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834978 vs. ExPASy Swiss-Prot
Match: ALF1_XYLFA (Probable fructose-bisphosphate aldolase class 1 OS=Xylella fastidiosa GN=XF_0826 PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 7.765e-66
Identity = 121/225 (53.78%), Postives = 161/225 (71.56%), Query Frame = 2
Query:   56 DELIKNAAYIGTPGKGILAADESTGTIGKRLSSINVENVEANRRALRELLFCTPGALQYLSGVILFEETLYQKTAAGKPFVDVLKEGGVLPGIKVDKGTVELAGTNGETTTQGLDGLAQRCQKYYEAGARFAKWRAVLKIGPNEPSQLAINENANGLARYAIICQENGLVPIVEPEILVDGPHDINKCADVTERVLAACYKALNDHHVLLEGTLLKPNMVTPGSE 730
            ++L + A  +   GKGI+A DES GTI KR SS+ +EN+E NRRA RELL  TP    Y+SG ILF+ET+ Q T AG PF   + + G++PGIKVDKG   LAG  GE  T+GLDGL  R ++YY+ GARFAKWRAV+ IG + PS + I+ N + LARYA +CQE GLVP+VEPE+++DG HDI+   +VTE  L + + AL + +V+LEGT+LK +MV PG++
Sbjct:    4 EQLAETAQAMVASGKGIIAIDESAGTIAKRFSSVGIENIEENRRAYRELLLTTPKLSDYISGAILFDETIRQSTKAGVPFPKYMADHGIIPGIKVDKGAYPLAGCPGELVTEGLDGLRARLEEYYKLGARFAKWRAVINIGDDIPSGMCIDANVHALARYAALCQEQGLVPMVEPEVIMDGNHDISAAYEVTEATLRSLFNALYEQNVVLEGTILKASMVIPGTD 228          
BLAST of CF834978 vs. ExPASy Swiss-Prot
Match: ALF1_XANAC (Probable fructose-bisphosphate aldolase class 1 OS=Xanthomonas axonopodis pv. citri GN=XAC3344 PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.951e-65
Identity = 121/223 (54.26%), Postives = 157/223 (70.40%), Query Frame = 2
Query:   56 DELIKNAAYIGTPGKGILAADESTGTIGKRLSSINVENVEANRRALRELLFCTPGALQYLSGVILFEETLYQKTAAGKPFVDVLKEGGVLPGIKVDKGTVELAGTNGETTTQGLDGLAQRCQKYYEAGARFAKWRAVLKIGPNEPSQLAINENANGLARYAIICQENGLVPIVEPEILVDGPHDINKCADVTERVLAACYKALNDHHVLLEGTLLKPNMVTPG 724
            ++L + A  +  PGKGI+A DEST TI KR +S+ +EN+E NRRA RELL  TP    Y+SG ILF+ET+ QKT  G PF + +   G++PGIKVDKG   LAG  GE  T+GLDGL  R ++YY  GARFAKWRAV+ IG + PS   I  N++ LARYA +CQE GLVP+VEPE+++DG HDI  C +VTE  L + + AL + +V+LEGT+LK +MV  G
Sbjct:    4 EQLAETAQAMVAPGKGIIAIDESTSTIAKRFASVGIENIEENRRAYRELLLTTPKLSDYISGAILFDETIRQKTKDGVPFAEYMTAHGIIPGIKVDKGAQPLAGMPGELVTEGLDGLRARLEEYYTLGARFAKWRAVINIGEDIPSGTCIEANSHALARYAALCQEQGLVPMVEPEVIMDGSHDIETCYEVTEATLRSLFGALYEQNVVLEGTILKASMVISG 226          
BLAST of CF834978 vs. ExPASy Swiss-Prot
Match: ALF1_XANCP (Probable fructose-bisphosphate aldolase class 1 OS=Xanthomonas campestris pv. campestris GN=XCC3185 PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.854e-65
Identity = 122/223 (54.71%), Postives = 155/223 (69.51%), Query Frame = 2
Query:   56 DELIKNAAYIGTPGKGILAADESTGTIGKRLSSINVENVEANRRALRELLFCTPGALQYLSGVILFEETLYQKTAAGKPFVDVLKEGGVLPGIKVDKGTVELAGTNGETTTQGLDGLAQRCQKYYEAGARFAKWRAVLKIGPNEPSQLAINENANGLARYAIICQENGLVPIVEPEILVDGPHDINKCADVTERVLAACYKALNDHHVLLEGTLLKPNMVTPG 724
            ++L + A  +  PGKGI+A DEST TI KR S + +EN E NRRA RELL  TP    Y+SG ILF+ET+ QKT  G PF   + + G++PGIKVDKG   LAG  GE  T+GLDGL  R ++YY  GARFAKWRAV+ IG + PS   I  NA+ LARYA +CQE GLVP+VEPE+++DG HDI  C +VTE  L + + AL + +V+LEGT+LK +MV  G
Sbjct:    4 EQLAETAQAMVAPGKGIIAIDESTSTIAKRFSGVGIENTEENRRAYRELLLTTPKLSDYISGAILFDETIRQKTKDGVPFAKYMADHGIIPGIKVDKGAQPLAGMPGELVTEGLDGLRARLEEYYTLGARFAKWRAVINIGEDIPSGTCIEANAHALARYAALCQEQGLVPMVEPEVIMDGDHDIETCYEVTEATLRSLFGALYEQNVVLEGTILKASMVISG 226          
BLAST of CF834978 vs. ExPASy Swiss-Prot
Match: ALFC_CHLRE (Fructose-bisphosphate aldolase 1, chloroplastic OS=Chlamydomonas reinhardtii GN=ALDCHL PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 8.585e-65
Identity = 133/232 (57.33%), Postives = 163/232 (70.26%), Query Frame = 2
Query:   35 CFKGKYPDELIKNAAYIGTPGKGILAADESTGTIGKRLSSINVENVEANRRALRELLFCTPGALQYLSGVILFEETLYQKTAAGKPFVDVLKEGGVLPGIKVDKGTVELAGTNGETTTQGLDGLAQRCQKYYEAGARFAKWRAVLKIGPNEPSQLAINENANGLARYAIICQENGLVPIVEPEILVDGPHDINKCADVTERVLAACYKALNDHHVLLEGTLLKPNMVTPGSE 730
            C  GKY +ELIK A  + + G+GILA DES  T GKRL SI VEN E NRRA RELL   PG  QY+SG ILFEETLYQ TA+GK FVDV+KE  ++PGIKVDKG V    T   +   GLDG     + YY+AGARFAKWR+V+ I P+ PS + +   A GLARYA I Q  GLVPIVEPE+L+DG HDI++C +V E + A  +K + D+ V+L+G LLKP MVTPG++
Sbjct:   25 CAPGKYDEELIKTAGTVASKGRGILAMDESNATCGKRLDSIGVENTEENRRAYRELLVTAPGLGQYISGAILFEETLYQSTASGKKFVDVMKEQNIVPGIKVDKGLVP-CPTPTMSWCMGLDGWTSAAE-YYKAGARFAKWRSVVSI-PHGPS-IMLPRLAYGLARYAAIAQNAGLVPIVEPEVLLDGEHDIDRCLEVQEAIWAETFKYMADNKVMLQGILLKPAMVTPGAD 252          
BLAST of CF834978 vs. ExPASy Swiss-Prot
Match: ALF_TRYBB (Fructose-bisphosphate aldolase, glycosomal OS=Trypanosoma brucei brucei GN=ALD PE=1 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 3.615e-55
Identity = 115/232 (49.57%), Postives = 144/232 (62.07%), Query Frame = 2
Query:   41 KGKYPDELIKNAAYIGTPGKGILAADESTGTIGKRLSSINVENVEANRRALRELLFCTPGALQYLSGVILFEETLYQKTAAGKPFVDVLKEGGVLPGIKVDKGTVELA-GTNGETTTQGLDGLAQRCQKYYEAGARFAKWRAVLKIGPNEPSQLAINENANGLARYAIICQENGLVPIVEPEILVDGPHDINKCADVTERVLAACYKALNDHHVLLEGTLLKPNMVTPGSET 733
            K  Y  ELI+ A  +  PGKG+LAADESTG+  KR + I + N   +RR  R L+    G  QY+SGVIL +ET+YQK   G+ F   L+  GV+PGIK D G   L  G  GE  T GLDG  +R +KYY  G RF KWR V KI     S+  +  NA  LARYAI+ Q  GLVPIVEPE+++DG HDI  C  V++ V +    AL+ H V+ EG LLKPNMV PG+E+
Sbjct:   19 KTPYEAELIETAKKMTAPGKGLLAADESTGSCSKRFAGIGLSNTAEHRRQYRALMLECEGFEQYISGVILHDETVYQKAKTGETFPQYLRRRGVVPGIKTDCGLEPLVEGAKGEQMTAGLDGYIKRAKKYYAMGCRFCKWRNVYKIQNGTVSEAVVRFNAETLARYAILSQLCGLVPIVEPEVMIDGTHDIETCQRVSQHVWSEVVSALHRHGVVWEGCLLKPNMVVPGAES 250          
BLAST of CF834978 vs. ExPASy Swiss-Prot
Match: ALF_ENCCU (Fructose-bisphosphate aldolase OS=Encephalitozoon cuniculi GN=ECU01_0240 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.861e-43
Identity = 92/210 (43.81%), Postives = 132/210 (62.86%), Query Frame = 2
Query:   95 GKGILAADESTGTIGKRLSSINVENVEANRRALRELLFCTPGALQYLSGVILFEETLYQKTAAGKPFVDVLKEGGVLPGIKVDKGTVELAGTNGETTTQGLDGLAQRCQKYYEAGARFAKWRAVLKIGPNEPSQLAINENANGLARYAIICQENGLVPIVEPEILVDGPHDINKCADVTERVLAACYKALNDHHVLLEGTLLKPNMVTPG 724
            GKGILAADE+  T+G+R   + + N E NRR  RE+LF T G  +Y+ GVIL +ET  Q + +G P  ++LK+ G+  GIK+DKG ++      E  + GL+ L  RC+      A FAKWR++       PS+  INEN + LA+YAIICQ+NGLVPIVEPE+ ++G + + +  +VT ++L+   K LN   V + G L+K + VT G
Sbjct:   21 GKGILAADETPKTLGRRFEKLGITNTEENRRKFREILFSTKGIERYIGGVILNQETFEQTSGSGVPLTELLKKKGIEIGIKLDKGLIDYK--EKEKISVGLEDLDLRCKSSAFKDATFAKWRSLFYFYDGIPSEDCINENCSILAKYAIICQKNGLVPIVEPEVFLEGDYSMKRSYEVTRQILSTLMKYLNYELVYIPGVLIKASYVTSG 228          
The following BLAST results are available for this feature:
BLAST of CF834978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ALF1_XYLFA7.765e-6653.78Probable fructose-bisphosphate aldolase class 1 OS... [more]
ALF1_XANAC2.951e-6554.26Probable fructose-bisphosphate aldolase class 1 OS... [more]
ALF1_XANCP3.854e-6554.71Probable fructose-bisphosphate aldolase class 1 OS... [more]
ALFC_CHLRE8.585e-6557.33Fructose-bisphosphate aldolase 1, chloroplastic OS... [more]
ALF_TRYBB3.615e-5549.57Fructose-bisphosphate aldolase, glycosomal OS=Tryp... [more]
ALF_ENCCU1.861e-4343.81Fructose-bisphosphate aldolase OS=Encephalitozoon ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06H12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834978 ID=CF834978; Name=CF834978; organism=Citrus sinensis; type=EST; length=742bp
CAAATTTTCTACTCTTAAGTAGATCACCATGTCTTGCTTCAAGGGCAAAT
ACCCCGATGAGCTCATTAAAAACGCTGCCTACATTGGCACCCCTGGAAAG
GGTATCCTTGCTGCTGATGAGTCAACAGGCACCATTGGCAAGCGTCTATC
CAGCATCAATGTTGAGAATGTTGAGGCAAACAGGCGTGCTCTCCGCGAGC
TCCTTTTCTGCACTCCCGGTGCCCTTCAGTACCTCAGTGGTGTCATCCTC
TTCGAGGAGACCCTCTACCAGAAGACTGCTGCTGGCAAGCCCTTTGTTGA
TGTCTTGAAGGAGGGTGGAGTCCTCCCTGGAATTAAGGTTGACAAGGGTA
CTGTTGAGCTTGCTGGTACCAATGGTGAGACCACCACCCAGGGTCTTGAT
GGCCTCGCCCAGCGCTGCCAGAAATACTATGAAGCTGGTGCTCGTTTTGC
CAAATGGCGTGCTGTTCTTAAGATTGGCCCTAATGAGCCTTCGCAGCTGG
CCATCAATGAGAATGCCAATGGCCTGGCCCGATATGCTATCATCTGCCAG
GAGAATGGCCTTGTTCCCATTGTTGAACCTGAGATCCTTGTTGACGGTCC
CCATGACATCAACAAGTGTGCTGATGTGACCGAGCGTGTTCTTGCTGCAT
GCTACAAGGCTCTGAATGACCACCATGTCCTTCTTGAGGGTACCCTTTTG
AAGCCCAACATGGTGACCCCTGGATCTGAAACTCCCAAAGTT
back to top