CF834979

Overview
NameCF834979
Unique NameCF834979
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length521
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1827 contig Csv1_Contig1827:195..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834979 vs. ExPASy Swiss-Prot
Match: IF1A_METS5 (Translation initiation factor 1A OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:   73 EDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 294
            E+G+    V +MLG       C+DG +R   I G+M KK WI  GD++L    D+Q  KAD++ +YM DE R L
Sbjct:   19 EEGEVICVVKKMLGAEHIIIACLDGKERTARIPGRMRKKTWIKEGDVVLAAPWDFQPTKADIVYRYMNDEIRKL 92
The following BLAST results are available for this feature:
BLAST of CF834979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
IF1A_METS57.813e-1141.89Translation initiation factor 1A OS=Metallosphaera... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834979 ID=CF834979; Name=CF834979; organism=Citrus sinensis; type=EST; length=521bp
GGAAAGGGAGGAAAGAACAGGCCTAGGGGAAAGAATGAAGCTGACGACGA
GAAGCGTGAGCTTGTCTTCAAGGAAGACGGACAGGAATATGCCCAAGTCC
TTCGTATGCTCGGCAATGGTCGGTGTGAAGCTATGTGCATCGATGGAACC
AAGCGTCTTTGCCACATCCGTGGGAAGATGCACAAAAAGGTTTGGATTGC
AGCTGGTGATATAATACTTGTTGGCCTACGTGATTATCAGGATGACAAGG
CTGATGTCATCCTCAAGTATATGCCCGACGAGGCAAGGCTTCTGAAGGCT
TATGGTGAACTTCCAGAGAGTACCCGTCTCAATGAGGGCATTGCTGGTGG
TCTTGATGAAGAGGATGATGGCGCTGATAATGATTACATCGAGTTTGAAG
ACGAAGATATTGATAAGATCTAGGCTCCGACAATCGACTCTGTCTGGGGT
TTATGTTCAATATTTAGCAAAAATGGAGTACGCCAATGTATTGGTTACTT
AAAAGCTGAAAATATGTGTTT
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