CF834983

Overview
NameCF834983
Unique NameCF834983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834983 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 1.796e-16
Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = -3
Query:  289 GDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRGVTLTLEIQKEYGKLLKDFNKGLVNN----KDMEALKADVEKFASSFDMPG 540
            GD SAL PGG+R+GTPA+TSRG  E+DFE++G+F H GV +  +   E GK LKDF      N    +++  L   VE+F+  F++PG
Sbjct:  420 GDVSALRPGGIRLGTPALTSRGFKEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDFKAFTATNEQFKQEVAELAKRVEEFSGKFEIPG 507          
BLAST of CF834983 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.063e-16
Identity = 44/97 (45.36%), Postives = 64/97 (65.98%), Query Frame = -3
Query:  265 GDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRGVTLTLEIQKE-YGKLLKDFNKGLVNN----KDMEALKADVEKFASSFDMPGFKMSEMKY 540
            GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+F   V+L L+++ E  G  LKDF + L  +     ++  LK DVE+FA  F   GF+ + MKY
Sbjct:  420 GDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGFEKATMKY 516          
BLAST of CF834983 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.593e-15
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = -3
Query:  259 GDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRGVTLTLEIQKE-YGKLLKDFNKGLVNN----KDMEALKADVEKFASSFDMPGFKMSEMKYKD 540
            GD SA+ PGG+R+GTPA+TSRG LE+DF ++ +FF   V + ++++ E  G  LKDF   L ++     ++  L+ DVE++A  F   GF+   MKYK+
Sbjct:  420 GDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 518          
BLAST of CF834983 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.544e-15
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = -3
Query:  259 GDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRGVTLTLEIQKE-YGKLLKDFNKGLVNN---KDMEALKADVEKFASSFDMPGFKMSEMKYKD 540
            GD SA+ PGG+R+GTPA+TSRG +E+DF ++  FF   V L ++I+ E  G  LKDF   + ++    ++  L+ DVE++A  F   GF+   MKYK+
Sbjct:  420 GDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGTKLKDFVTAMESSAIQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of CF834983 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.867e-14
Identity = 41/98 (41.84%), Postives = 62/98 (63.27%), Query Frame = -3
Query:  259 GDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRGVTLTLEIQKE-YGKLLKDFNKGLVNN---KDMEALKADVEKFASSFDMPGFKMSEMKYKD 540
            GD SA+ PGG+R+GTPA+TSRG +E+DF ++   F   V L ++I+ E  G  LKDF   + ++    ++  L+ DVE++A  F   GF+   MKYK+
Sbjct:  420 GDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLKDFVAAMQSSAFQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of CF834983 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.170e-13
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = -3
Query:  286 GDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRGVTLTLEIQKEYGKLLKDFNKGLVNNKDMEALKAD----VEKFASSFDMPGF 540
            GD SA+ PGG+R+G PA+TSRG LE DF ++  F   GV + LE++ +  K L+DF   L+ + +     AD    VE+FA +F MPGF
Sbjct:  414 GDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKSKTTK-LQDFKSFLLKDPETSHQLADLRQRVEQFARAFPMPGF 501          
BLAST of CF834983 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 2.683e-12
Identity = 37/89 (41.57%), Postives = 56/89 (62.92%), Query Frame = -3
Query:  286 GDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRGVTLTLEIQKEYGKLLKDFNKGLVNNKD----MEALKADVEKFASSFDMPGF 540
            GD SA+ PGG+R+G PA+TSR   E DF ++ +F   GV + LE++ +  K L+DF   L+ + +    +  L+  VE+FA +F MPGF
Sbjct:  414 GDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTAK-LQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGF 501          
BLAST of CF834983 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.504e-12
Identity = 37/89 (41.57%), Postives = 56/89 (62.92%), Query Frame = -3
Query:  286 GDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRGVTLTLEIQKEYGKLLKDFNKGLVNNKDMEALKAD----VEKFASSFDMPGF 540
            GD SA+ PGG+R+G PA+TSR   E DF ++ +F   GV + LE++++  K L+DF   L+ + +     AD    V++FA +F MPGF
Sbjct:  414 GDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKRKTAK-LQDFKSFLLKDPETSQHLADLRRRVQQFARAFPMPGF 501          
The following BLAST results are available for this feature:
BLAST of CF834983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
GLYC_CAEBR1.796e-1646.59Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYM_PEA3.063e-1645.36Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_SOLTU2.593e-1542.42Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_FLAPR7.544e-1542.86Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYN_FLAPR2.867e-1441.84Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYM_BOVIN3.170e-1344.94Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_HUMAN2.683e-1241.57Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_RABIT3.504e-1241.57Serine hydroxymethyltransferase, mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834983 ID=CF834983; Name=CF834983; organism=Citrus sinensis; type=EST; length=545bp
TTTTTTTTTTTTTTTTTACTAAATTTGTTGTTTTATTTGTAGATCCCCTT
TAATCATTTGACCAAAGAGAAACGGATCTCACTTTCACAATATGGGTGGG
TACCAATTAAAAAAAAAAAAAAAGTTAAAACGAAAGCGTTTAAACCTAGG
ACAACAAAAGGCAAAGATGCATGCAATTTTTTTTCTTCTCTTTCTGTTTT
TCAACACTAAAGAGTTGCTAACAACACAGTAACAATAATGATGATACTTT
GAGACCTAATCCTTGTACTTCATCTCGGACATTTTAAAGCCGGGCATGTC
AAATGAGCTGGCGAACTTCTCAACATCAGCCTTGAGGGCCTCCATGTCCT
TGTTGTTCACCAAACCCTTGTTGAAGTCCTTCAAGAGCTTTCCATACTCC
TTTTGAATTTCCAACGTGAGGGTCACACCGCGGTGAAAAAACTCTCCAAT
TTGCTCGAAGTCCTTCTCCAACAAACCTCTGGAAGTCATGGCAGGAGTAC
CGATTCTTACTCCTCCAGGGGCCAAGGCACTGCTGTCACCAAACA
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