CF834993

Overview
NameCF834993
Unique NameCF834993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834993_ssr35 microsatellite CF834993_ssr35:35..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 40/94 (42.55%), Postives = 54/94 (57.45%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 503
            W  EED  L AY+K +G   W  + +     L R  KSC  RW NYL+P +K+G+ T+EE  L+I L +  GNKW  IA  +PGRT   +  +W
Sbjct:   17 WTKEEDERLVAYIKAHGEGCWRSLPKAAG--LLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYW 108          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 45/133 (33.83%), Postives = 67/133 (50.38%), Query Frame = 3
Query:  189 CLLLEMKERQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYDQ 587
            C   +   +  W  EED  L +Y+K +G   W  + +  +  L R  KSC  RW NYL+P +K+G+ T EE  L+I L +  GNKW  IA  +PGRT   +  +W    +++   +        PI+E K  Q
Sbjct:    6 CCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPR--SAGLQRCGKSCRLRWINYLRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKGIDPATHRPINETKTSQ 136          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB_AVIMB (Transforming protein Myb OS=Avian myeloblastosis virus GN=V-MYB PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.856e-15
Identity = 42/121 (34.71%), Postives = 66/121 (54.55%), Query Frame = 3
Query:  174 HNGQRCLLLEMKERQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW-EVFKEKQQRE 533
            H  Q+ L  E+ +   W  EED  +  +V++YGPK WS +++ +     R  K C ERW N+L P +KK S T+EE  ++     + GN+W +IA  +PGRT   +   W    + K ++E
Sbjct:    9 HRWQKVLNPELNKGP-WTKEEDQRVIEHVQKYGPKRWSDIAKHLK---GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKVEQE 125          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYBA_MOUSE (Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.856e-15
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW-EVFKEKQQRE 533
            W  EED  +   V++YGPK WS +++ +     R  K C ERW N+L P +KK S T+EE  ++     + GN+W +IA  +PGRT   +   W    + K ++E
Sbjct:   90 WTKEEDQRVIELVQKYGPKRWSLIAKHLK---GRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQE 191          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYBA_HUMAN (Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.856e-15
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW-EVFKEKQQRE 533
            W  EED  +   V++YGPK WS +++ +     R  K C ERW N+L P +KK S T+EE  ++     + GN+W +IA  +PGRT   +   W    + K ++E
Sbjct:   90 WTKEEDQRVIELVQKYGPKRWSLIAKHLK---GRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQE 191          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.730e-15
Identity = 40/105 (38.10%), Postives = 60/105 (57.14%), Query Frame = 3
Query:  210 ERQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 524
            +R  W  EED+ LR Y+++YG    +++S  +   L R  KSC  RW NYL+P IK G  ++EE  ++  L A  G++W  IAA +PGRT   +  +W     K+
Sbjct:   13 KRGPWSPEEDSKLRDYIEKYG-NGGNWISFPLKAGLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKK 116          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYBAA_DICDI (Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.730e-15
Identity = 40/115 (34.78%), Postives = 62/115 (53.91%), Query Frame = 3
Query:  201 EMKERQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW-EVFKEKQQREQKD 542
            E K +  W  EED  LR+ V  +G K W +++  +     R+ + C ERW N L P IK+ + T EE  +++   +K+GNKW +I+  +PGRT   +   W    K K  ++Q D
Sbjct:  753 ESKAKGHWTKEEDEKLRSLVDLHGTKRWKYIASLLCL---RNGRQCRERWSNQLDPSIKRDAWTLEEDRIILDAHSKYGNKWAEISKLLPGRTNCAIKNHWNSTMKRKLSKKQYD 864          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MB3R1_ARATH (Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.730e-15
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 3
Query:  171 LHNGQRCLLLEMKERQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 524
            LH  Q+ L  E+ +   W  EED  +   V++YGPK+WS +SQ +     R  K C ERW N+L PGI K + T EE+  +I     +GNKW ++   +PGR+   +   W    +K+
Sbjct:   74 LHRWQKVLNPELVKGP-WSKEEDNTIIDLVEKYGPKKWSTISQHLP---GRIGKQCRERWHNHLNPGINKNAWTQEEELTLIRAHQIYGNKWAELMKFLPGRSDNSIKNHWNSSVKKK 187          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.872e-15
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 524
            W  EED  L +++   G   W  V +     L R  KSC  RW NYL+P +K+G L+D E+ LVI L ++ GN+W KIAA +PGRT   +   W    +K+
Sbjct:   17 WTAEEDKKLISFILTNGQCCWRAVPKLAG--LKRCGKSCRLRWTNYLRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKK 115          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB_XENLA (Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.872e-15
Identity = 38/105 (36.19%), Postives = 57/105 (54.29%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW-EVFKEKQQRE 533
            W  EED  +   V +YGPK WS +++ +     R  K C ERW N+L P +KK S T+EE   +     + GN+W +IA  +PGRT   +   W    + K+++E
Sbjct:   92 WTKEEDQRVIELVHKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNPEVKKSSWTEEEDRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKEEQE 193          

HSP 2 Score: 67.781 bits (164), Expect = 5.574e-11
Identity = 42/123 (34.15%), Postives = 61/123 (49.59%), Query Frame = 3
Query:  138 LEVKKYTV*GILHNGQRCLLLEMKERQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNK-WKKIAAEVPGRTAKRLGKWW 503
            +E+ ++   G+L  G+R L      + RW  EED  L+  V+Q G +EW  ++  +    NR    C  RW+  L P + KG  T EE   VI L  K+G K W  IA  + GR  K+  + W
Sbjct:   17 IEMYEHDYDGLLSKGKRHL-----GKTRWTREEDEKLKKLVEQNGTEEWKVIASFLP---NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKGRIGKQCRERW 131          
The following BLAST results are available for this feature:
BLAST of CF834993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
MYB4_ARATH2.187e-1542.55Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYB32_ARATH2.187e-1533.83Transcription factor MYB32 OS=Arabidopsis thaliana... [more]
MYB_AVIMB2.856e-1534.71Transforming protein Myb OS=Avian myeloblastosis v... [more]
MYBA_MOUSE2.856e-1536.19Myb-related protein A OS=Mus musculus GN=Mybl1 PE=... [more]
MYBA_HUMAN2.856e-1536.19Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=... [more]
RAX1_ARATH3.730e-1538.10Transcription factor RAX1 OS=Arabidopsis thaliana ... [more]
MYBAA_DICDI3.730e-1534.78Myb-like protein AA OS=Dictyostelium discoideum GN... [more]
MB3R1_ARATH3.730e-1536.44Myb-related protein 3R-1 OS=Arabidopsis thaliana G... [more]
ODO1_PETHY4.872e-1540.59Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 S... [more]
MYB_XENLA4.872e-1536.19Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834993 ID=CF834993; Name=CF834993; organism=Citrus sinensis; type=EST; length=647bp
CTTGTGCTCTCCTTTTAGTGCTCTCAGNAGNTTCGTTTGTTTGTTTGTTT
CCTCTTTCTTTCTCTCTTGCTTTCTGTTTCATTGAAGAAGCTAAGGTTGC
CGGATGTGCAAAGAAGAACAAGTTGGGTTTTTTAACACTTGAAGTTAAGA
AATATACAGTATGAGGAATTTTACACAATGGACAGCGTTGTTTACTCCTG
GAAATGAAGGAGAGACAGCGTTGGAGAACTGAAGAGGATGCTTTATTACG
TGCATATGTGAAACAATATGGCCCGAAGGAGTGGAGTTTTGTATCACAGC
GCATGAACACACCCCTAAACAGGGATGCAAAATCTTGCTTAGAAAGGTGG
AAGAACTACCTCAAACCAGGCATCAAGAAAGGATCCCTTACTGACGAGGA
GCAGCATCTTGTCATCCATCTCCAAGCAAAACACGGCAACAAGTGGAAGA
AAATTGCAGCTGAAGTTCCCGGTCGAACTGCTAAGAGACTGGGCAAGTGG
TGGGAAGTGTTCAAAGAGAAGCAGCAGAGAGAACAGAAGGATTCCATAAG
AATAGTTGATCCAATTGATGAGCACAAGTACGATCAGATTCTAGAGACTT
TTGCAGAGAAGCTAGTAAACAATCATTCATTTGTCATGGCCACTTCT
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