CF834994

Overview
NameCF834994
Unique NameCF834994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10149 contig Csv1_Contig10149:905..1629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834994 vs. ExPASy Swiss-Prot
Match: C6A21_DROME (Probable cytochrome P450 6a21 OS=Drosophila melanogaster GN=Cyp6a21 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 42/126 (33.33%), Postives = 63/126 (50.00%), Query Frame = -2
Query:  302 QNLVYLQAIIKETLRLYPAGPLLAPREAMEDCTVSG---YHVPAGTRLMINAWKIQRDPRVWENPSAFQPERFLPGHGAHADVDVRGQQFELIPFGSGRRSCPGASSALQVLHLTLARLLHAFELA 670
            ++LVYL  ++ ETLRLY   P+L  RE +ED  V G   Y +  G  ++I    + RD +++ NP+ F P+ F P      D        E +PFG G R+C G         + LA L+  F+ +
Sbjct:  355 KDLVYLDQVVSETLRLYTVLPVLN-RECLEDYEVPGHPKYVIKKGMPVLIPCGAMHRDEKLYANPNTFNPDNFSPERVKERD------SVEWLPFGDGPRNCIGMRFGQMQARIGLALLIKDFKFS 473          
BLAST of CF834994 vs. ExPASy Swiss-Prot
Match: C12E1_DROME (Probable cytochrome P450 12e1, mitochondrial OS=Drosophila melanogaster GN=Cyp12e1 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 48/158 (30.38%), Postives = 75/158 (47.47%), Query Frame = -2
Query:  230 KERAVDESDTQNLVYLQAIIKETLRLYPAGPLLAPREAMEDCTVSGYHVPAGTRLMINA-WKIQRDPRVWENPSAFQPERFLPGHGAHADVDVRGQQFELIPFGSGRRSCPGASSALQVLHLTLARLLHAFELATPLDQPVDMSESPGLTIPKATPLK 700
            K+ ++   + +NL YL+A IKE +R+YP GP    R    D  +SGY V AGT + I A +++    +       F PER+L        V      F  +PFG G RSC G      +L + ++RL+  F++    D P++ +      +    P K
Sbjct:  352 KDSSLTIENMRNLPYLRACIKEGIRMYPIGPGTL-RRMPHDVVLSGYRVVAGTDVGIAANYQMANMEQFVPKVREFIPERWLRDESNSHLVGETATPFMYLPFGFGPRSCAGKRIVDMMLEIAISRLVRNFKIG--FDYPIENAFKAQFFVQPNIPFK 506          
BLAST of CF834994 vs. ExPASy Swiss-Prot
Match: CP4AE_RAT (Cytochrome P450 4A14 OS=Rattus norvegicus GN=Cyp4a14 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 45/152 (29.61%), Postives = 63/152 (41.45%), Query Frame = -2
Query:  272 EELDQQVGKERAVDESDTQNLVYLQAIIKETLRLYPAGPLLAPREAMEDCTVSGYHVPAGTRLMINAWKIQRDPRVWENPSAFQPERFLPGHGAHADVDVRGQQFELIPFGSGRRSCPGASSALQVLHLTLARLLHAFE-LATPLDQPVDMS 724
            EE+   +G   +V       + Y    IKE LRLYP  P ++   +       G  +P G    I  + +  +P  W NP  F P RF P    H+           +PF  G R+C G   A+  L + +A  L  FE L  P   PV M+
Sbjct:  346 EEVQSILGDGTSVTWDHLDQIPYTTMCIKEALRLYPPVPSVSRELSSPVTFPDGRSIPKGITTTILIYGLHHNPSYWPNPKVFDPSRFSPDSPRHSHA--------YLPFSGGARNCIGKQFAMNELKVAVALTLLRFELLPDPTRIPVPMA 489          
BLAST of CF834994 vs. ExPASy Swiss-Prot
Match: CP2CL_CANFA (Cytochrome P450 2C21 (Fragment) OS=Canis familiaris GN=CYP2C21 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 46/163 (28.22%), Postives = 69/163 (42.33%), Query Frame = -2
Query:  236 EELDQQVGKERAVDESDTQNLVYLQAIIKETLRLYPAGPLLAPREAMEDCTVSGYHVPAGTRLMINAWKIQRDPRVWENPSAFQPERFLPGHGAHADVDVRGQQFELIPFGSGRRSCPGASSALQVLHLTLARLLHAFELATPLDQPVDMSESPGLTIPKATP 724
            EE+ + VG+ R+    D   + Y  A++ E  R     P   P    +D     Y +P GT ++ +   +  D + + NP  F P  FL  +G+    D        + F +G+R C G   A   L L L  +L  F L  PL  P D+  +P      ATP
Sbjct:  322 EEIHRVVGRHRSPCMQDRSCMPYTDAVVHEIQRYIDLVPNNLPHSVTQDIKFREYLIPKGTTILTSLTSVLHDEKGFPNPDQFDPGHFLDENGSFKKSDY------FMAFSAGKRVCVGEGLARMELFLLLTNILQHFTL-KPLVDPKDIDTTPIANGLGATP 477          
BLAST of CF834994 vs. ExPASy Swiss-Prot
Match: CP2CB_RAT (Cytochrome P450 2C11 OS=Rattus norvegicus GN=Cyp2c11 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 41/157 (26.11%), Postives = 68/157 (43.31%), Query Frame = -2
Query:  254 EELDQQVGKERAVDESDTQNLVYLQAIIKETLRLYPAGPLLAPREAMEDCTVSGYHVPAGTRLMINAWKIQRDPRVWENPSAFQPERFLPGHGAHADVDVRGQQFELIPFGSGRRSCPGASSALQVLHLTLARLLHAFELATPLDQPVDMSESPGLT 724
            EE+++ +G+ R+    D   + Y  A++ E  R     P   P     D     Y +P GT ++++   I  D + + NP  F P  FL   G     D        +PF +G+R C G + A   L L    +L  F L + +D   D+  +P ++
Sbjct:  325 EEIERVIGRNRSPCMKDRSQMPYTDAVVHEIQRYIDLVPTNLPHLVTRDIKFRNYFIPKGTNVIVSLSSILHDDKEFPNPEKFDPGHFLDERGNFKKSDY------FMPFSAGKRICAGEALARTELFLFFTTILQNFNLKSLVDVK-DIDTTPAIS 474          
BLAST of CF834994 vs. ExPASy Swiss-Prot
Match: CP27A_HUMAN (Sterol 26-hydroxylase, mitochondrial OS=Homo sapiens GN=CYP27A1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 43/140 (30.71%), Postives = 69/140 (49.29%), Query Frame = -2
Query:  305 EELDQQVGKERAVDESDTQNLVYLQAIIKETLRLYPAGPLLAPREAMEDCTVSGYHVPAGTRLMINAWKIQRDPRVWENPSAFQPERFLPGHGAHADVDVRGQQFELIPFGSGRRSCPGASSALQVLHLTLARLLHAFEL 724
            EE+   V   +     D  ++  L+A++KETLRLYP  P  + R   ++  V G+  P  T+ +   + + RDP  +  P +FQP R+L    +          F  +PFG G R+C G   A   + L LARL+  +++
Sbjct:  363 EEVVGVVPAGQVPQHKDFAHMPLLKAVLKETLRLYPVVPTNS-RIIEKEIEVDGFLFPKNTQFVFCHYVVSRDPTAFSEPESFQPHRWL--RNSQPATPRIQHPFGSVPFGYGVRACLGRRIAELEMQLLLARLIQKYKV 499          
BLAST of CF834994 vs. ExPASy Swiss-Prot
Match: CP24A_RAT (1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial OS=Rattus norvegicus GN=Cyp24a1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 47/156 (30.13%), Postives = 79/156 (50.64%), Query Frame = -2
Query:  212 DTQNLVYLQAIIKETLRLYPAGPLLAPREAMEDCTVSG-YHVPAGTRLMINAWKIQRDPRVWENPSAFQPERFLPGHGAHADVDVRGQQFELIPFGSGRRSCPGASSALQVLHLTLARLLHAFELATPLDQPVDMSESPGLTIPKATPLKVLLSPR 676
            D +N+ YL+A +KE++RL P+ P       ++  TV G Y +P GT L +N   +      +E+   F+PER+L         + +   F  +PFG G+R C G   A   LHL L  ++  +++    ++PV+M    G+ +P +  L +   PR
Sbjct:  370 DLRNMPYLKACLKESMRLTPSVPFTT--RTLDKPTVLGEYALPKGTVLTLNTQVLGSSEDNFEDSHKFRPERWL-------QKEKKINPFAHLPFGIGKRMCIGRRLAELQLHLALCWIIQKYDIVATDNEPVEMLHL-GILVP-SRELPIAFRPR 514          
BLAST of CF834994 vs. ExPASy Swiss-Prot
Match: CP1A2_CHICK (Cytochrome P450 1A2 (Fragment) OS=Gallus gallus GN=CYP1A2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 30/88 (34.09%), Postives = 48/88 (54.55%), Query Frame = -2
Query:  458 ELDQQVGKERAVDESDTQNLVYLQAIIKETLRLYPAGPLLAPREAMEDCTVSGYHVPAGTRLMINAWKIQRDPRVWENPSAFQPERFL 721
            ELD  +G+ER    S+   L Y +A I ET+  +   P   P     D T++G+H+P    + +N W++  +  +WE+P  F+ ERFL
Sbjct:   84 ELDTAIGRERRSWLSERSMLPYKEAFILETVPTWQFVPFTIPHSTTRDTTLNGFHIPKECCVFVNQWQVNHEAELWEDPFVFRTERFL 171          
The following BLAST results are available for this feature:
BLAST of CF834994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 488
Match NameE-valueIdentityDescription
C6A21_DROME6.816e-1133.33Probable cytochrome P450 6a21 OS=Drosophila melano... [more]
C12E1_DROME6.816e-1130.38Probable cytochrome P450 12e1, mitochondrial OS=Dr... [more]
CP4AE_RAT8.902e-1129.61Cytochrome P450 4A14 OS=Rattus norvegicus GN=Cyp4a... [more]
CP2CL_CANFA8.902e-1128.22Cytochrome P450 2C21 (Fragment) OS=Canis familiari... [more]
CP2CB_RAT8.902e-1126.11Cytochrome P450 2C11 OS=Rattus norvegicus GN=Cyp2c... [more]
CP27A_HUMAN8.902e-1130.71Sterol 26-hydroxylase, mitochondrial OS=Homo sapie... [more]
CP24A_RAT8.902e-1130.131,25-dihydroxyvitamin D(3) 24-hydroxylase, mitocho... [more]
CP1A2_CHICK8.902e-1134.09Cytochrome P450 1A2 (Fragment) OS=Gallus gallus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834994 ID=CF834994; Name=CF834994; organism=Citrus sinensis; type=EST; length=725bp
TTTTTTTTTTGAGGAAGAAAAAACTTAATTCATGCAAGCAAAGATCGCCC
ACCACTGCAGCAGTAATTTGTAGTAAGTGCATAACATTAAGAAATTAATT
TAACCAACACTACAGCTCGCTTTATTTAGTAAACAATAAGCACTTCGAGC
TTTGCTTGCTGGATTTAATAATTGCTCAAACTCAAAAGCCATAGGGGTTG
GCAGGGAGGAGGCGAGGAGAAAGGAGAACCTTCAATGGGGTGGCCTTAGG
TATGGTTAAGCCAGGAGACTCTGACATGTCAACAGGCTGATCCAATGGGG
TTGCTAGTTCAAATGCATGAAGGAGTCGAGCAAGCGTGAGGTGAAGGACC
TGGAGAGCAGATGATGCACCTGGGCAAGAACGTCGGCCAGAGCCAAAAGG
AATGAGTTCAAATTGTTGGCCCCTAACATCAACATCTGCATGGGCGCCAT
GGCCTGGGAGAAATCTCTCTGGTTGGAAGGCTGATGGATTTTCCCAAACC
CTTGGATCCCTTTGAATTTTCCAAGCATTTATCATCAAGCGGGTGCCAGC
CGGGACATGGTACCCAGAGACAGTGCAATCTTCCATTGCTTCACGTGGTG
CTAAGAGAGGACCCGCGGGATACAAGCGGAGGGTCTCTTTGATAATCGCT
TGGAGATACACTAGGTTTTGGGTGTCCGACTCATCAACTGCTCGTTCCTT
ACCAACTTGTTGGTCCAATTCTTCG
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