CF835016

Overview
NameCF835016
Unique NameCF835016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 4.939e-32
Identity = 64/86 (74.42%), Postives = 71/86 (82.56%), Query Frame = -2
Query:  219 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 476
            G KF DE FV+K P PG+LSMANAGP T GSQFF+CT  T WLDGK VVFGQVVEGMDVVKAIEKVG+ +G T+K V +ADCGQLS
Sbjct:   87 GEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVADCGQLS 172          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: PPIF_RAT (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 6.451e-32
Identity = 63/86 (73.26%), Postives = 70/86 (81.40%), Query Frame = -2
Query:  219 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 476
            GS+F DENF  KH GPG+LSMANAGP T GSQFF+CT KT+WLDGK VVFG V EGMDVVK IE  GS SG+T+K +VI DCGQLS
Sbjct:  121 GSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQLS 206          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: PPIF_MOUSE (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Mus musculus GN=Ppif PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 6.451e-32
Identity = 63/86 (73.26%), Postives = 70/86 (81.40%), Query Frame = -2
Query:  219 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 476
            GS+F DENF  KH GPG+LSMANAGP T GSQFF+CT KT+WLDGK VVFG V EGMDVVK IE  GS SG+T+K +VI DCGQLS
Sbjct:  121 GSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQLS 206          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: PPIA_PONPY (Peptidyl-prolyl cis-trans isomerase A OS=Pongo pygmaeus GN=PPIA PE=2 SV=4)

HSP 1 Score: 135.961 bits (341), Expect = 8.425e-32
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = -2
Query:  222 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 476
            G KF DENF+ KH GPGILSMANAGP T GSQFF+CTAKTEWLDGK VVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   80 GEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: PPIA_PAPAN (Peptidyl-prolyl cis-trans isomerase A OS=Papio anubis GN=PPIA PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 8.425e-32
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = -2
Query:  222 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 476
            G KF DENF+ KH GPGILSMANAGP T GSQFF+CTAKTEWLDGK VVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   80 GEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: PPIA_PANTR (Peptidyl-prolyl cis-trans isomerase A OS=Pan troglodytes GN=PPIA PE=3 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 8.425e-32
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = -2
Query:  222 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 476
            G KF DENF+ KH GPGILSMANAGP T GSQFF+CTAKTEWLDGK VVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   80 GEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: PPIA_PANPA (Peptidyl-prolyl cis-trans isomerase A OS=Pan paniscus GN=PPIA PE=3 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 8.425e-32
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = -2
Query:  222 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 476
            G KF DENF+ KH GPGILSMANAGP T GSQFF+CTAKTEWLDGK VVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   80 GEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: PPIA_MACMU (Peptidyl-prolyl cis-trans isomerase A OS=Macaca mulatta GN=PPIA PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 8.425e-32
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = -2
Query:  222 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 476
            G KF DENF+ KH GPGILSMANAGP T GSQFF+CTAKTEWLDGK VVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   80 GEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: PPIA_HYLSY (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates syndactylus GN=PPIA PE=3 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 8.425e-32
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = -2
Query:  222 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 476
            G KF DENF+ KH GPGILSMANAGP T GSQFF+CTAKTEWLDGK VVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   80 GEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: PPIA_HYLLE (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates leucogenys GN=PPIA PE=3 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 8.425e-32
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = -2
Query:  222 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 476
            G KF DENF+ KH GPGILSMANAGP T GSQFF+CTAKTEWLDGK VVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   80 GEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
The following BLAST results are available for this feature:
BLAST of CF835016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CYPH_MAIZE4.939e-3274.42Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
PPIF_RAT6.451e-3273.26Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_MOUSE6.451e-3273.26Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIA_PONPY8.425e-3271.76Peptidyl-prolyl cis-trans isomerase A OS=Pongo pyg... [more]
PPIA_PAPAN8.425e-3271.76Peptidyl-prolyl cis-trans isomerase A OS=Papio anu... [more]
PPIA_PANTR8.425e-3271.76Peptidyl-prolyl cis-trans isomerase A OS=Pan trogl... [more]
PPIA_PANPA8.425e-3271.76Peptidyl-prolyl cis-trans isomerase A OS=Pan panis... [more]
PPIA_MACMU8.425e-3271.76Peptidyl-prolyl cis-trans isomerase A OS=Macaca mu... [more]
PPIA_HYLSY8.425e-3271.76Peptidyl-prolyl cis-trans isomerase A OS=Hylobates... [more]
PPIA_HYLLE8.425e-3271.76Peptidyl-prolyl cis-trans isomerase A OS=Hylobates... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06I14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835016 ID=CF835016; Name=CF835016; organism=Citrus sinensis; type=EST; length=477bp
TATTTAAAACCCCTAAAGGCTCCAGGGACATAAAAAACAGGTGATCAAGA
ACCCCTTACGGAGACCCGATCCGACCCGAACAAGGAACGGAGGAGGAAAA
TTAGATAAAGATTAAAAGTCCTACAGACACGCCCACGTAATAATAGATAA
CATAATCATCATCACGATCGGGATCAGACGGCTCGTGATGATGGCGATCA
TTATCATGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGG
GCTTGTTGGTCCTGCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACG
ACGTCCATCCCTTCGACGACCTGACCGAACACAACGGGCTTCCCATCGAG
CCACTCGGTCTTGGCCGTACAGACGAAGAACTGAGATCCGGTGGTTCCGG
GTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGGGTGCTTCTTCACG
AAGTTCTCATCGGCGAATTTCGAGCCG
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