CF835016

Overview
NameCF835016
Unique NameCF835016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: PPWD1_BOVIN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Bos taurus GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.265e-11
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = -2
Query:  249 GSKFADE-NFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 476
            G +F DE +   +H  P  LSMANAG  T GSQFF+    T WLD K  VFG+V +GM+VV+ I  V   + +T+KP
Sbjct:  557 GGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV-KVNPKTDKP 632          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: CYP9_CAEBR (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis briggsae GN=cyn-9 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.818e-11
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = -2
Query:  279 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKV 476
            G  F DE FV KH  P +LSMAN GP +  SQFF+ TA     +GK VVFG+V++G +VV  ++ +
Sbjct:   90 GRYFDDEKFVLKHSKPYLLSMANKGPNSNSSQFFITTAPAPHCNGKHVVFGEVIKGREVVDVLDNL 155          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: PPIL1_CRYNE (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Cryptococcus neoformans GN=CYP1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.680e-11
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = -2
Query:  246 GSKFADENFVK-KHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPV 476
            G +FADE   + +  G GIL+MAN+GP T GSQFF+  A T +LDGK  +FG+V  GM  ++ +E V   + + ++PV
Sbjct:   74 GDRFADEIHPELRFVGAGILAMANSGPNTNGSQFFITCAPTPYLDGKHTIFGRVSSGMKTIQRLEAV--RTDKDDRPV 149          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: PPWD1_MOUSE (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Mus musculus GN=Ppwd1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.277e-11
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = -2
Query:  249 GSKFADE-NFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 476
            G +F DE +   +H  P  LSMANAG  T GSQFF+    T WLD K  VFG+V +GM+VV+ I  V   + +T+KP
Sbjct:  559 GGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVSKGMEVVQRIFNV-KVNPQTDKP 634          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: PPIL6_BOVIN (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos taurus GN=PPIL6 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.198e-11
Identity = 35/85 (41.18%), Postives = 47/85 (55.29%), Query Frame = -2
Query:  222 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 476
            G  F DENF   H   G+L M N G  + GSQF++      +LD K V FGQ++EG DV+  +E V + + R  +  VI   GQL
Sbjct:  221 GPTFEDENFSVPHNKRGVLGMVNKGRHSNGSQFYITLQAAPYLDKKYVAFGQLIEGTDVLHHLESVPTENERPIQNCVITASGQL 305          
The following BLAST results are available for this feature:
BLAST of CF835016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PPWD1_BOVIN1.265e-1148.05Peptidylprolyl isomerase domain and WD repeat-cont... [more]
CYP9_CAEBR2.818e-1148.48Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
PPIL1_CRYNE3.680e-1144.87Peptidyl-prolyl cis-trans isomerase-like 1 OS=Cryp... [more]
PPWD1_MOUSE6.277e-1148.05Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPIL6_BOVIN8.198e-1141.18Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06I14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835016 ID=CF835016; Name=CF835016; organism=Citrus sinensis; type=EST; length=477bp
TATTTAAAACCCCTAAAGGCTCCAGGGACATAAAAAACAGGTGATCAAGA
ACCCCTTACGGAGACCCGATCCGACCCGAACAAGGAACGGAGGAGGAAAA
TTAGATAAAGATTAAAAGTCCTACAGACACGCCCACGTAATAATAGATAA
CATAATCATCATCACGATCGGGATCAGACGGCTCGTGATGATGGCGATCA
TTATCATGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGG
GCTTGTTGGTCCTGCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACG
ACGTCCATCCCTTCGACGACCTGACCGAACACAACGGGCTTCCCATCGAG
CCACTCGGTCTTGGCCGTACAGACGAAGAACTGAGATCCGGTGGTTCCGG
GTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGGGTGCTTCTTCACG
AAGTTCTCATCGGCGAATTTCGAGCCG
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