CF835016

Overview
NameCF835016
Unique NameCF835016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.289e-26
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = -2
Query:  225 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 476
            G KF DENF+ KH GPG+LSMAN+GP T GSQFF+   KT+WLDGK VVFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  216 GKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEARGSKDGKPKQKVIIADCGE 299          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: PPIE_MOUSE (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 6.908e-26
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = -2
Query:  225 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 476
            G KF DENF+ KH GPG+LSMAN+GP T GSQFF+   KT+WLDGK VVFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  216 GKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVMIADCGE 299          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: PAL4B_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4B OS=Homo sapiens GN=PPIAL4B PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.908e-26
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = -2
Query:  225 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 476
            G KF DEN ++KH G GILSMANAGP T GSQFF+C AKTEWLDGK V FG+V E +++V+A+E  G  + +T+K + IADCGQ
Sbjct:   80 GEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: CYPC_YEAST (Peptidyl-prolyl cis-trans isomerase C, mitochondrial OS=Saccharomyces cerevisiae GN=CPR3 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.022e-26
Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = -2
Query:  222 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 476
            GSKFADENFVKKH   G+LSMANAGP T GSQFF+ T    WLDGK VVFG+V +GMD+VKAIE  G++SG+    +VI + G+L
Sbjct:   98 GSKFADENFVKKHDKAGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTKGMDIVKAIESYGTASGKPRAEIVIEEAGEL 182          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: PPIA_ECHGR (Peptidyl-prolyl cis-trans isomerase OS=Echinococcus granulosus GN=CYP-1 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.539e-25
Identity = 57/85 (67.06%), Postives = 65/85 (76.47%), Query Frame = -2
Query:  222 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 476
            GSKF DENF  KH  P +LSMANAG  T GSQFF+ TA T WLDGK VVFG+V  G DVVK +E VGSSSG+T++ V+I DCGQL
Sbjct:   78 GSKFEDENFNHKHSKPMMLSMANAGKNTNGSQFFITTAVTSWLDGKHVVFGEVESGEDVVKDMEAVGSSSGKTSQEVLITDCGQL 162          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: PPIA1_RHIOR (Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus oryzae GN=cyp2 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.539e-25
Identity = 54/85 (63.53%), Postives = 63/85 (74.12%), Query Frame = -2
Query:  222 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 476
            G+KF DENF  KH GPG LSMANAGP T GSQFF+ T K  WLDGK VVFG+V EGMDVV+ IE +GS +G     ++I +CGQL
Sbjct:   80 GNKFRDENFTLKHTGPGDLSMANAGPNTNGSQFFITTIKCSWLDGKHVVFGRVTEGMDVVQNIESLGSPNGTPRAKIIIDNCGQL 164          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: CYPH_SCHPO (Peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=ppi1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.010e-25
Identity = 54/83 (65.06%), Postives = 61/83 (73.49%), Query Frame = -2
Query:  228 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCG 476
            G KF DENF  KH  PG+LSMANAGP T GSQFF+ T  T WLDGK VVFG+V EGMDVVK +E +GS+SG T   +VI  CG
Sbjct:   78 GEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLGSNSGATRARIVIDKCG 160          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: PPIE_BOVIN (Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.625e-25
Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = -2
Query:  225 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 476
            G KF DENF+ KH GPG+LSMAN+GP T GSQFF+   KT+WLDGK VVFG++ +G+DV++ IE  GS  G+  + V+I+DCG+
Sbjct:  216 GKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEITDGLDVLRQIEAQGSKDGKPKQKVIISDCGE 299          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: CYPH_UROFA (Peptidyl-prolyl cis-trans isomerase OS=Uromyces fabae GN=PIG28 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.637e-25
Identity = 56/86 (65.12%), Postives = 64/86 (74.42%), Query Frame = -2
Query:  222 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMD-VVKAIEKVGSSSGRTNKPVVIADCGQL 476
            G KF DENF KKH   G+LSMANAGP T GSQFF+   KT WLDGK VVFG+V+EG D VVKA+EK GS SG+T+  + I DCG L
Sbjct:   78 GKKFEDENFQKKHVERGMLSMANAGPNTNGSQFFITVTKTPWLDGKHVVFGKVIEGYDQVVKAMEKTGSQSGKTSSVLKIEDCGTL 163          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.701e-24
Identity = 55/86 (63.95%), Postives = 64/86 (74.42%), Query Frame = -2
Query:  222 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 476
            G +FADENF  +H GPGILSMANAG  T GSQFF+ T  T WLDG+ VVFG+V+EGMDVV AIE   +  G R   PV+IADCG+L
Sbjct:  106 GERFADENFKLRHTGPGILSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVIEGMDVVTAIETTKTLPGDRPATPVIIADCGEL 191          
The following BLAST results are available for this feature:
BLAST of CF835016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PPIE_PONAB5.289e-2661.90Peptidyl-prolyl cis-trans isomerase E OS=Pongo abe... [more]
PPIE_MOUSE6.908e-2661.90Peptidyl-prolyl cis-trans isomerase E OS=Mus muscu... [more]
PAL4B_HUMAN6.908e-2661.90Peptidylprolyl cis-trans isomerase A-like 4B OS=Ho... [more]
CYPC_YEAST9.022e-2663.53Peptidyl-prolyl cis-trans isomerase C, mitochondri... [more]
PPIA_ECHGR1.539e-2567.06Peptidyl-prolyl cis-trans isomerase OS=Echinococcu... [more]
PPIA1_RHIOR1.539e-2563.53Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus... [more]
CYPH_SCHPO2.010e-2565.06Peptidyl-prolyl cis-trans isomerase OS=Schizosacch... [more]
PPIE_BOVIN2.625e-2558.33Peptidyl-prolyl cis-trans isomerase E OS=Bos tauru... [more]
CYPH_UROFA7.637e-2565.12Peptidyl-prolyl cis-trans isomerase OS=Uromyces fa... [more]
PPIB_ORPSP1.701e-2463.95Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06I14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835016 ID=CF835016; Name=CF835016; organism=Citrus sinensis; type=EST; length=477bp
TATTTAAAACCCCTAAAGGCTCCAGGGACATAAAAAACAGGTGATCAAGA
ACCCCTTACGGAGACCCGATCCGACCCGAACAAGGAACGGAGGAGGAAAA
TTAGATAAAGATTAAAAGTCCTACAGACACGCCCACGTAATAATAGATAA
CATAATCATCATCACGATCGGGATCAGACGGCTCGTGATGATGGCGATCA
TTATCATGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGG
GCTTGTTGGTCCTGCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACG
ACGTCCATCCCTTCGACGACCTGACCGAACACAACGGGCTTCCCATCGAG
CCACTCGGTCTTGGCCGTACAGACGAAGAACTGAGATCCGGTGGTTCCGG
GTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGGGTGCTTCTTCACG
AAGTTCTCATCGGCGAATTTCGAGCCG
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