CF835017

Overview
NameCF835017
Unique NameCF835017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835017 vs. ExPASy Swiss-Prot
Match: CYPD_YEAST (Peptidyl-prolyl cis-trans isomerase D OS=Saccharomyces cerevisiae GN=CPR5 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.289e-33
Identity = 81/170 (47.65%), Postives = 101/170 (59.41%), Query Frame = 3
Query:   12 TPKMFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYEGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTARTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 518
            T K++FD+  G +  GRIVM L+   TP+T ENF  L      + +  K + Y  S FHRVIP FM Q            +SI+G+ F DENF  KH  PG LSMAN G  TNGSQFF+ T    WLDGKHVVFG+V++GMDVV  IE V + S     K V+I + G+L
Sbjct:   33 THKVYFDINHGDKQIGRIVMGLYGLTTPQTVENFYQLT-----ISRDPK-MGYLNSIFHRVIPNFMIQGGDFTHRSGIGGKSIFGNTFKDENFDVKHDKPGRLSMANRGKNTNGSQFFITTVPCPWLDGKHVVFGEVLDGMDVVHYIENVKTDSRNMPVKEVIIVESGEL 196          
BLAST of CF835017 vs. ExPASy Swiss-Prot
Match: CYP9_CAEBR (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis briggsae GN=cyn-9 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 70/149 (46.98%), Postives = 94/149 (63.09%), Query Frame = 3
Query:   18 KMFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKP-LHYEGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTARTEWLDGKHVVFGQVVEGMDVVKAIEKV 461
            ++F DM +  +P GRI ++LF    P+T ENFRALCTGE G+  + K  LHY+G+  HRV+  FM Q             SIYG  F DE FV KH+ P +LSMAN GP +N SQFF+ TA     +GKHVVFG+V++G +VV  ++ +
Sbjct:    7 RVFLDMALDEKPIGRIEIKLFTSEAPKTCENFRALCTGEVGMAPNNKARLHYKGNEIHRVVKKFMIQGGDITDGDGRGGFSIYGRYFDDEKFVLKHSKPYLLSMANKGPNSNSSQFFITTAPAPHCNGKHVVFGEVIKGREVVDVLDNL 155          
BLAST of CF835017 vs. ExPASy Swiss-Prot
Match: CYP9_CAEEL (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis elegans GN=cyn-9 PE=2 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.632e-32
Identity = 74/169 (43.79%), Postives = 102/169 (60.36%), Query Frame = 3
Query:   18 KMFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKP-LHYEGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTARTEWLDGKHVVFGQVVEGMDVVKAIEKVG-SSSGRTNKPVVIADCGQL 518
            ++F D++V     GRI + LF +  P+T ENFRALCTGE G+  + K  LHY+ + FHR++  FM Q             SIYG  F DE F  KH+ P +LSMAN GP +N SQFF+ TA     +GKHVVFG+VV+G +VV  I+ +      +    V+I++CG+L
Sbjct:    6 RVFLDISVDENLIGRIEIRLFVEDAPKTCENFRALCTGEVGMTPNNKARLHYKQNEFHRIVKKFMIQGGDITEGDGRGGFSIYGRYFDDEKFKLKHSRPYLLSMANKGPNSNSSQFFITTAAAPHCNGKHVVFGEVVKGQNVVDYIDNLAVDDKSKPLAKVLISNCGEL 174          
BLAST of CF835017 vs. ExPASy Swiss-Prot
Match: PPIL6_BOVIN (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos taurus GN=PPIL6 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.749e-32
Identity = 69/166 (41.57%), Postives = 96/166 (57.83%), Query Frame = 3
Query:   21 MFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYEGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTARTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 518
            +F D+++   P GR++ EL++D  P+T +NF+ LCTG+ G  +SG  LHY GS FHRV+     Q            ESIYG  F DENF   H   G+L M N G  +NGSQF++      +LD K+V FGQ++EG DV+  +E V + + R  +  VI   GQL
Sbjct:  140 VFLDISIDLYPIGRLIFELYSDTCPKTCKNFQILCTGKAGFSQSGIKLHYTGSIFHRVVRNGWVQGGDIVAGKGDNGESIYGPTFEDENFSVPHNKRGVLGMVNKGRHSNGSQFYITLQAAPYLDKKYVAFGQLIEGTDVLHHLESVPTENERPIQNCVITASGQL 305          
BLAST of CF835017 vs. ExPASy Swiss-Prot
Match: PPIL6_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Homo sapiens GN=PPIL6 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.357e-31
Identity = 67/164 (40.85%), Postives = 93/164 (56.71%), Query Frame = 3
Query:   21 MFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYEGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTARTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCG 512
            +F D+ +   P GR++ EL+ DV P+T +NF+ LCTG+ G  + G  LHY+ S FHR++     Q            ESIYG  F DENF   H   G+L MAN G  +NGSQF++    T +LD K V FGQ++EG +V+K +E V + + R      I D G
Sbjct:  144 VFLDICIDSSPIGRLIFELYCDVCPKTCKNFQVLCTGKAGFSQRGIRLHYKNSIFHRIVQNGWIQGGDIVYGKGDNGESIYGPTFEDENFSVPHNKRGVLGMANKGRHSNGSQFYITLQATPYLDRKFVAFGQLIEGTEVLKQLELVPTQNERPIHMCRITDSG 307          
BLAST of CF835017 vs. ExPASy Swiss-Prot
Match: CYPR_CALVI (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Calliphora vicina GN=NINAA PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.606e-30
Identity = 73/170 (42.94%), Postives = 95/170 (55.88%), Query Frame = 3
Query:   12 TPKMFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYEGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTARTEWLDGKHVVFGQVVEGMDVVKAIEKVGS-SSGRTNKPVVIADCGQL 518
            T K++ D+    +P GRIV  LF    P+T  NFR +C   +G+  +     Y GS FHRVI  F+ Q             SIYG  F DE    +H  PG L MAN GP TNG QF+V T   +WL+GKH VFG+V+EGMD V AIE V + +      PV+I +CG++
Sbjct:   25 TSKIYMDVKHQKKPLGRIVFGLFGKRAPKTVTNFRHICL--RGINGTT----YVGSEFHRVISRFLIQGGDIVNNDGTGSTSIYGDFFQDEALDVEHLRPGYLGMANRGPDTNGCQFYVTTVAAQWLNGKHTVFGKVIEGMDTVYAIEDVKTDTDDHPIDPVIIVNCGEM 188          
BLAST of CF835017 vs. ExPASy Swiss-Prot
Match: CYPR_DROME (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Drosophila melanogaster GN=ninaA PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 71/172 (41.28%), Postives = 98/172 (56.98%), Query Frame = 3
Query:   12 TPKMFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYEGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADEN--FVKKHTGPGILSMANAGPGTNGSQFFVCTARTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGR-TNKPVVIADCGQL 518
            T +++ D+    +P GRI   LF  + P+T  NFR +C   +G+  +     Y GS FHRV+  F+ Q             SIYG  F DE+     +H  PG L MAN GP TNG QF+V T   +WLDGKH VFG+V+EGMD + AIE V + +     +PVVI++CG++
Sbjct:   26 TSRIYMDVKHNKKPVGRITFGLFGKLAPKTVANFRHICL--RGINGTS----YVGSRFHRVVDRFLVQGGDIVNGDGTGSISIYGDYFPDEDKALAVEHNRPGYLGMANRGPDTNGCQFYVTTVGAKWLDGKHTVFGKVLEGMDTIYAIEDVKTDTDDFPVEPVVISNCGEI 191          
BLAST of CF835017 vs. ExPASy Swiss-Prot
Match: PPIL1_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Rhizopus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.480e-25
Identity = 67/131 (51.15%), Postives = 80/131 (61.07%), Query Frame = 3
Query:   57 GRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYEGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTARTEWLDGKHVVFGQVVEGMDVVK 446
            G I +EL+ D  PRT +NF  L           K  +Y+G SFHR+I  FM Q             SIYG +FADE N   +HTG GILSMANAGP TNGSQFF+  A T WLDGKH +FG+V +GM+VVK
Sbjct:   14 GSIHIELYWDHAPRTCKNFYELA----------KRGYYDGVSFHRIIADFMIQGGDPTGTGRGGT-SIYGERFADEINPGLQHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSDGMNVVK 133          
BLAST of CF835017 vs. ExPASy Swiss-Prot
Match: PPIB_TREPA (Probable peptidyl-prolyl cis-trans isomerase OS=Treponema pallidum GN=ppiB PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.253e-24
Identity = 67/133 (50.38%), Postives = 79/133 (59.40%), Query Frame = 3
Query:   57 GRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYEGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTARTEWLDGKHVVFGQVVEGMDVVKAI 452
            G IV+ LF +  P T  NF  L  G   V K G+P  Y+G +FHRVI  FM Q                G +F DE +   +H  PG+LSMANAGPGTNGSQFF+    T WLDGKH VFG+VVEGM+VV AI
Sbjct:   49 GTIVLSLFFEKAPLTVCNFVGLAEGTLAVCK-GRPF-YQGLTFHRVIKDFMIQGGDPQGNGTGGP----GYQFPDECDPALRHDSPGVLSMANAGPGTNGSQFFITHVATPWLDGKHTVFGKVVEGMEVVHAI 175          
BLAST of CF835017 vs. ExPASy Swiss-Prot
Match: PPIL1_SCHPO (Peptidyl-prolyl cis-trans isomerase ppi1 OS=Schizosaccharomyces pombe GN=ppi1 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.636e-24
Identity = 67/150 (44.67%), Postives = 87/150 (58.00%), Query Frame = 3
Query:   57 GRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYEGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTARTEWLDGKHVVFGQVVEGMDVVKAIEKVGS-SSGRTNKPVVI 500
            G+I++EL+ +  P+T +NF  L           K  +Y+G  FHRVIP F+ Q             SIYG KF DE +    HTG GILSMANAGP TN SQFF+  A T WLDGKH +FG+VV G+ V K +  + + SS R  +P+ I
Sbjct:   11 GKILIELYTEHAPKTCQNFYTLA----------KEGYYDGVIFHRVIPDFVIQGGDPTGTGRGGT-SIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRVVSGLSVCKRMGLIRTDSSDRPIEPLKI 149          
The following BLAST results are available for this feature:
BLAST of CF835017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
CYPD_YEAST3.289e-3347.65Peptidyl-prolyl cis-trans isomerase D OS=Saccharom... [more]
CYP9_CAEBR5.610e-3346.98Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
CYP9_CAEEL1.632e-3243.79Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
PPIL6_BOVIN4.749e-3241.57Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos ... [more]
PPIL6_HUMAN2.357e-3140.85Peptidyl-prolyl cis-trans isomerase-like 6 OS=Homo... [more]
CYPR_CALVI2.606e-3042.94Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]
CYPR_DROME9.903e-3041.28Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]
PPIL1_RHIOR1.480e-2551.15Peptidyl-prolyl cis-trans isomerase-like 1 OS=Rhiz... [more]
PPIB_TREPA1.253e-2450.38Probable peptidyl-prolyl cis-trans isomerase OS=Tr... [more]
PPIL1_SCHPO1.636e-2444.67Peptidyl-prolyl cis-trans isomerase ppi1 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06I14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835017 ID=CF835017; Name=CF835017; organism=Citrus sinensis; type=EST; length=677bp
AAAAATGCCCAACCCCAAAGATGTTCTTCGACATGACCGTCGGCGGTCAG
CCGGCCGGCAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAAC
CGCCGAGAACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCGTCGGCAAGT
CCGGCAAGCCTCTCCACTACGAAGGCTCGTCCTTCCACCGTGTGATCCCC
GGATTCATGTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGG
CGAATCAATCTACGGCTCGAAATTCGCCGATGAGAACTTCGTGAAGAAGC
ACACCGGCCCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAAC
GGATCTCAGTTCTTCGTCTGTACGGCCAGGACCGAGTGGCTCGATGGGAA
GCACGTTGTGTTCGGTCAGGTCGTCGAAGGGATGGACGTCGTCAAGGCCA
TCGAGAAAGTGGGGTCCAGCTCCGGCAGGACCAACAAGCCCGTCGTGATC
GCTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCGTC
ATCACGAGCCGTCTGATCGCGATCGTGATGATGATTATGTTATCTATTAT
TATGTGGGCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTA
TGTTACTTGTTCGGGTCGGATCGGGTC
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