CF835017

Overview
NameCF835017
Unique NameCF835017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11875 contig Csv1_Contig11875:63..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835017 vs. ExPASy Swiss-Prot
Match: CYPB_VICFA (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.779e-46
Identity = 93/171 (54.39%), Postives = 111/171 (64.91%), Query Frame = 3
Query:   12 TPKMFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYEGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTARTEWLDGKHVVFGQVVEGMDVVKAIEKVGSS--SGRTNKPVVIADCGQL 518
            T K+FFD+ +GG+ AGRIV+ LF D  P+T ENF+ L TG KG G       Y+GS FHR+IP FM Q             SIYGSKF DE+F  KH GPG+LSMANAGP TNGSQFF+CT  T WLD +HVVFG V+EG+DVVK +E   +S       KP  IA  G+L
Sbjct:   81 TSKIFFDIEIGGESAGRIVIGLFGDAVPKTVENFKTLSTGAKGYG-------YQGSFFHRIIPNFMIQGGDFTEGNGTGGVSIYGSKFEDESFDLKHVGPGVLSMANAGPNTNGSQFFICTVPTPWLDNRHVVFGHVIEGLDVVKQLESQETSKLDNSPKKPCKIAKSGEL 244          
BLAST of CF835017 vs. ExPASy Swiss-Prot
Match: PPIH_ASPOR (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.857e-46
Identity = 91/173 (52.60%), Postives = 114/173 (65.90%), Query Frame = 3
Query:    3 KCPTPKMFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYEGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGS-KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTARTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 518
            K P P +FFD+T+GG+  GRI MELF  +TPRTAENFR  CTGE      G+P  Y+ S FHRVI  FM Q             +IYG+ +F DENF+ KH  PG+LSMAN+GP TNG QFF+ T  T +L+ KHVVFGQVVEGMDVV+ IE   ++  + N+ V I  CG++
Sbjct:   10 KTPNPVVFFDITLGGESLGRIKMELFTSITPRTAENFRQFCTGESK-SPQGRPQGYKNSKFHRVIKDFMIQGGDFVNGDGTGSRTIYGTPRFQDENFILKHDQPGLLSMANSGPNTNGCQFFITTTATPFLNNKHVVFGQVVEGMDVVRMIENTRTTRDKPNQDVTIIQCGEM 181          
BLAST of CF835017 vs. ExPASy Swiss-Prot
Match: PPID_ASHGO (Peptidyl-prolyl cis-trans isomerase D OS=Ashbya gossypii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.857e-46
Identity = 93/169 (55.03%), Postives = 116/169 (68.64%), Query Frame = 3
Query:   18 KMFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGV--GKSGKPLHYEGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTARTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 518
            K +FD+++GG+PAGR+V E+++DVTP+TAENF  LC G+ G    K G PL Y+GS FHRVI GFMCQ            ESIYG KF DENF +KH  P +LSMANAGP TNGSQ F+  A T  LDGKHVVFG+V++G  VV+AIE+  +++ R    V I  CG L
Sbjct:    6 KTYFDLSIGGKPAGRVVFEVYSDVTPKTAENFVRLCAGDAGECRTKPGVPLCYQGSLFHRVIKGFMCQFGDFTNGDGTGGESIYGEKFEDENFARKHDRPFLLSMANAGPNTNGSQCFITCAPTPHLDGKHVVFGEVIQGKRVVRAIERQETAADRPLADVRIDACGIL 174          
BLAST of CF835017 vs. ExPASy Swiss-Prot
Match: PPIA_STRCH (Peptidyl-prolyl cis-trans isomerase A OS=Streptomyces chrysomallus GN=ppiA PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.857e-46
Identity = 98/171 (57.31%), Postives = 113/171 (66.08%), Query Frame = 3
Query:   12 TPKMFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYEGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTARTEWLDGKHVVFGQVV--EGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 518
            T K++FD+T+   PAGRI   LF DV P+TAENFRAL TGEKG G       Y GSSFHRVI  FM Q            +SIYG KFADENF  KH   G+LSMANAG  TNGSQFF+ T  T WLDGKHVVFG+V   + M +V+ IE +GSSSGRT+  V IA+ G L
Sbjct:    2 TTKVYFDITIDDAPAGRITFNLFDDVVPKTAENFRALATGEKGFG-------YAGSSFHRVITDFMLQGGDFTRGDGTGGKSIYGEKFADENFQLKHDRVGLLSMANAGKNTNGSQFFITTVLTPWLDGKHVVFGEVADDDSMALVRKIEALGSSSGRTSAKVTIAESGAL 165          
BLAST of CF835017 vs. ExPASy Swiss-Prot
Match: RBP2_HUMAN (E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.681e-45
Identity = 91/168 (54.17%), Postives = 109/168 (64.88%), Query Frame = 3
Query:   15 PKMFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYEGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTARTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 518
            P +FFD+   G+P GRI MELF+++ PRTAENFRALCTGEKG G       ++ S FHRVIP F+CQ            +SIYG KF DENF  KHTGPG+LSMAN G  TN SQF +   + E LD KHVVFG V +GMD VK IE  GS  G   + + I +CGQ+
Sbjct: 3064 PVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG-------FKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECGQI 3224          
BLAST of CF835017 vs. ExPASy Swiss-Prot
Match: RBP2_BOVIN (E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.681e-45
Identity = 90/168 (53.57%), Postives = 110/168 (65.48%), Query Frame = 3
Query:   15 PKMFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYEGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTARTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 518
            P +FFD+    +P GRI MELF+++ P+TAENFRALCTGEKG G       ++ S FHRVIP F+CQ             SIYG KF DENF  KHTGPG+LSMAN G  TN SQFF+   + E LD KHVVFG V +GMD VK IE  GS  G  ++ ++I +CGQ+
Sbjct:  925 PVVFFDICADDEPLGRITMELFSNIVPKTAENFRALCTGEKGFG-------FKSSIFHRVIPDFVCQGGDITKHDGTGGRSIYGDKFEDENFDVKHTGPGLLSMANRGQDTNNSQFFITLKKAERLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVSRRIIITECGQI 1085          
BLAST of CF835017 vs. ExPASy Swiss-Prot
Match: PPIH_ASPFU (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus fumigatus GN=cyp3 PE=3 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.681e-45
Identity = 93/169 (55.03%), Postives = 114/169 (67.46%), Query Frame = 3
Query:   15 PKMFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYEGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGS-KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTARTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 518
            P +FFD+ +GG P GRI MELFADVTPRTAENFR  CTGE      GKP  Y+ S FHRVI  FM Q             +IYG+ KFADENFV KH   G+LSMAN+GP TNG QFF+ T  T +L+GKHVVFGQVV+GMD+V+ IE   +   + ++ V+I  CG++
Sbjct:   14 PIVFFDIALGGVPLGRIKMELFADVTPRTAENFRRFCTGESK-NSQGKPQGYKNSKFHRVIKDFMIQGGDFVNGDGTGSCTIYGTPKFADENFVLKHDRAGVLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVVDGMDIVRMIENTRTIRDKPSQDVIITQCGEM 181          
BLAST of CF835017 vs. ExPASy Swiss-Prot
Match: PPIH_GIBZE (Peptidyl-prolyl cis-trans isomerase H OS=Gibberella zeae GN=CYP3 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.892e-45
Identity = 95/172 (55.23%), Postives = 112/172 (65.12%), Query Frame = 3
Query:   15 PKMFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYEGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSK-FADENFVKKHTGPGILSMANAGPGTNGSQFFVCTARTEWLDGKHVVFGQVVEGMDVVKAIE--KVG-SSSGRTNKPVVIADCGQL 518
            P +FFD+T+GG+P GRI  ELF DV P+TAENFR  CTGE      G+P  Y+GS FHR+IP FMCQ              I+G K F DENF  KH  PG+LSMANAGP TNGSQFF+ T  T +LD KHVVFG+V EGMDVVK +E  K G       N  VVI+ CG++
Sbjct:   12 PLVFFDITIGGEPLGRITFELFKDVVPKTAENFRQFCTGESKT-PVGRPQGYKGSKFHRIIPNFMCQGGDFLNGDGTGSTCIWGFKSFEDENFTLKHDQPGLLSMANAGPNTNGSQFFITTVPTPFLDNKHVVFGKVFEGMDVVKKMEATKTGYRGKDMPNLDVVISQCGEM 182          
BLAST of CF835017 vs. ExPASy Swiss-Prot
Match: CYPH_UROFA (Peptidyl-prolyl cis-trans isomerase OS=Uromyces fabae GN=PIG28 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.892e-45
Identity = 93/166 (56.02%), Postives = 109/166 (65.66%), Query Frame = 3
Query:   24 FFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYEGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTARTEWLDGKHVVFGQVVEGMD-VVKAIEKVGSSSGRTNKPVVIADCGQL 518
            +FD++  G+P GRIV EL+ DV PRT  NFR LC    G G       ++ S FHRVIP FM Q            ESIYG KF DENF KKH   G+LSMANAGP TNGSQFF+   +T WLDGKHVVFG+V+EG D VVKA+EK GS SG+T+  + I DCG L
Sbjct:    5 YFDVSSNGKPLGRIVFELYDDVVPRTTNNFRQLCLNPPGKG-------FKHSIFHRVIPDFMIQGGDFTNGNGTGGESIYGKKFEDENFQKKHVERGMLSMANAGPNTNGSQFFITVTKTPWLDGKHVVFGKVIEGYDQVVKAMEKTGSQSGKTSSVLKIEDCGTL 163          
BLAST of CF835017 vs. ExPASy Swiss-Prot
Match: PPIH_HUMAN (Peptidyl-prolyl cis-trans isomerase H OS=Homo sapiens GN=PPIH PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.345e-45
Identity = 89/171 (52.05%), Postives = 118/171 (69.01%), Query Frame = 3
Query:   15 PKMFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYEGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTARTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK---PVVIADCGQL 518
            P +FFD+++GGQ  GR+ +ELFADV P+TAENFR  CTGE    K G P+ Y+GS+FHRVI  FM Q             SIY   FADENF  +H+ PG+LSMAN+GP TNG QFF+  ++ +WLDGKHVVFG++++G+ V++ IE V   +G  NK   PVVI+ CG++
Sbjct:   11 PVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENV--PTGPNNKPKLPVVISQCGEM 177          
The following BLAST results are available for this feature:
BLAST of CF835017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
CYPB_VICFA5.779e-4654.39Peptidyl-prolyl cis-trans isomerase, chloroplastic... [more]
PPIH_ASPOR9.857e-4652.60Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]
PPID_ASHGO9.857e-4655.03Peptidyl-prolyl cis-trans isomerase D OS=Ashbya go... [more]
PPIA_STRCH9.857e-4657.31Peptidyl-prolyl cis-trans isomerase A OS=Streptomy... [more]
RBP2_HUMAN1.681e-4554.17E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=R... [more]
RBP2_BOVIN1.681e-4553.57E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos ta... [more]
PPIH_ASPFU1.681e-4555.03Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]
PPIH_GIBZE4.892e-4555.23Peptidyl-prolyl cis-trans isomerase H OS=Gibberell... [more]
CYPH_UROFA4.892e-4556.02Peptidyl-prolyl cis-trans isomerase OS=Uromyces fa... [more]
PPIH_HUMAN8.345e-4552.05Peptidyl-prolyl cis-trans isomerase H OS=Homo sapi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06I14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835017 ID=CF835017; Name=CF835017; organism=Citrus sinensis; type=EST; length=677bp
AAAAATGCCCAACCCCAAAGATGTTCTTCGACATGACCGTCGGCGGTCAG
CCGGCCGGCAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAAC
CGCCGAGAACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCGTCGGCAAGT
CCGGCAAGCCTCTCCACTACGAAGGCTCGTCCTTCCACCGTGTGATCCCC
GGATTCATGTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGG
CGAATCAATCTACGGCTCGAAATTCGCCGATGAGAACTTCGTGAAGAAGC
ACACCGGCCCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAAC
GGATCTCAGTTCTTCGTCTGTACGGCCAGGACCGAGTGGCTCGATGGGAA
GCACGTTGTGTTCGGTCAGGTCGTCGAAGGGATGGACGTCGTCAAGGCCA
TCGAGAAAGTGGGGTCCAGCTCCGGCAGGACCAACAAGCCCGTCGTGATC
GCTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCGTC
ATCACGAGCCGTCTGATCGCGATCGTGATGATGATTATGTTATCTATTAT
TATGTGGGCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTA
TGTTACTTGTTCGGGTCGGATCGGGTC
back to top