CF835025

Overview
NameCF835025
Unique NameCF835025
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5402 contig Csv1_Contig5402:19..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF835025 vs. ExPASy Swiss-Prot
Match: EF1G2_ARATH (Probable elongation factor 1-gamma 2 OS=Arabidopsis thaliana GN=At1g57720 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 53/173 (30.64%), Postives = 86/173 (49.71%), Query Frame = 2 
Query:  173 HKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFPD---KGTQLTCPGKPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENE-AKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPV-KKLFDARPHVSAWAADITSRPAWAKVL 676
            +K   FL +NP G+VPVLE  +  +FES AI +Y++++  D    G+ L       A +  W +  +L+ D  ++ L W   + P  G     A  EE   + L + L+     L+ + +L   S TL D+  + N+NL   T + KK   A PHV  +   + ++P + KVL
Sbjct:   40 NKSPEFLKMNPIGKVPVLETPEGPIFESNAIARYVSRKNGDNSLNGSSLI----EYAHIEQWIDFSSLEID--ANMLKW---FAPRMGYAPFSAPAEEAAISALKRGLEALNTHLASNTFLVGHSVTLADIVTICNLNLGFATVMTKKFTSAFPHVERYFWTMVNQPEFKKVL 203
The following BLAST results are available for this feature:
BLAST of CF835025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
EF1G2_ARATH1.744e-1130.64Probable elongation factor 1-gamma 2 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06I20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835025 ID=CF835025; Name=CF835025; organism=Citrus sinensis; type=EST; length=709bp
CACAAGTCAAGCCATAACTCACAATAACAAGCGAGGGAAGGAAGACCCAA
AGATGGCAGGCATCAAGGTCCACGGTTCTGTTTTCTCAACTGCTACGCAG
CGAGTTTTCGCATCCCTCTACGAGAAGGAGCTCGAATACGAGCTTGTTCC
CGTAGACATGAAGGCTGGTGAACACAAAAAGGAGGCCTTCCTTTCTTTGA
ATCCATTCGGTCAAGTTCCGGTGCTTGAACACGGCGACCAGAAGCTCTTC
GAATCAAGGGCAATCACCCAATACATCGCCCAGGAGTTTCCAGACAAAGG
CACCCAGTTAACATGCCCAGGCAAGCCCATCGCCCCGTTATTGGTATGGA
AGGAGGTGGAGGCACTCCAGTTCGACCCCCCATCATCGAAGCTCAACTGG
GAGCTCGTGTACAAGCCAATGTTTGGAATGACCACTGATCCAGCTGCGGT
TGAAGAAAATGAAGCTAAGCTTGCCAAAATTTTAGATGTTTACGAGGCCC
GTTTGTCTCAGTCCAAATACTTGGCGTGCGACAGCTTCACCTTGGTCGAT
TTGCATCATCTCCCCAATATTAATTTGTTGTTGGGGACGCCTGTCAAGAA
GCTGTTTGATGCACGCCCCCATGTTAGCGCATGGGCAGCTGATATCACTT
CCAGACCGGCTTGGGCTAAGGTCCTTGCCTTGCTCAAACACTGAACACTC
TGCCCGCTA
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