CF835040

Overview
NameCF835040
Unique NameCF835040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835040 vs. ExPASy Swiss-Prot
Match: IDHC_HUMAN (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Homo sapiens GN=IDH1 PE=1 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 6.260e-71
Identity = 128/189 (67.72%), Postives = 154/189 (81.48%), Query Frame = 3
Query:    3 KIQDLFQEVYEANWKSPFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 566
            + +D+FQE+Y+  +KS FEA  IWYEHRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAW+RGLAHRAKLDNN  L  F   LE   I T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+ +L+
Sbjct:  222 RFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKIKLA 410          
BLAST of CF835040 vs. ExPASy Swiss-Prot
Match: IDHC_PONAB (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pongo abelii GN=IDH1 PE=2 SV=2)

HSP 1 Score: 266.544 bits (680), Expect = 8.176e-71
Identity = 127/189 (67.20%), Postives = 154/189 (81.48%), Query Frame = 3
Query:    3 KIQDLFQEVYEANWKSPFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 566
            + +D+FQE+Y+  +KS FEA  IWYEHRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAW+RGLAHRAKLDNN  L  F   LE   + T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+ +L+
Sbjct:  222 RFKDIFQEIYDKQYKSQFEARKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSVETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKIKLA 410          
BLAST of CF835040 vs. ExPASy Swiss-Prot
Match: IDHP_PIG (Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 1.822e-70
Identity = 127/185 (68.65%), Postives = 147/185 (79.46%), Query Frame = 3
Query:    3 KIQDLFQEVYEANWKSPFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 551
            + +D+FQE++E ++K+ F+   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  C+ TVESG MTKDLA  IHG    +  EH+LNT +F+D +  +L
Sbjct:  230 RFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 414          
BLAST of CF835040 vs. ExPASy Swiss-Prot
Match: IDHP_RAT (Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 5.300e-70
Identity = 126/185 (68.11%), Postives = 147/185 (79.46%), Query Frame = 3
Query:    3 KIQDLFQEVYEANWKSPFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 551
            + +D+FQE+++ ++K+ F+   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  C+ TVESG MTKDLA  IHG    +  EH+LNT +F+D +  +L
Sbjct:  261 RFKDIFQEIFDKHYKTDFDKNKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVQTVESGAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTIKSNL 445          
BLAST of CF835040 vs. ExPASy Swiss-Prot
Match: IDHP_MOUSE (Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3)

HSP 1 Score: 263.848 bits (673), Expect = 5.300e-70
Identity = 126/185 (68.11%), Postives = 147/185 (79.46%), Query Frame = 3
Query:    3 KIQDLFQEVYEANWKSPFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 551
            + +D+FQE+++ ++K+ F+   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  C+ TVESG MTKDLA  IHG    +  EH+LNT +F+D +  +L
Sbjct:  261 RFKDIFQEIFDKHYKTDFDKNKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVQTVESGAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTIKSNL 445          
BLAST of CF835040 vs. ExPASy Swiss-Prot
Match: IDHP_MACFA (Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 5.300e-70
Identity = 126/185 (68.11%), Postives = 147/185 (79.46%), Query Frame = 3
Query:    3 KIQDLFQEVYEANWKSPFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 551
            + +D+FQE+++ ++K+ F+   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  C+ TVESG MTKDLA  IHG    +  EH+LNT +F+D +  +L
Sbjct:  261 RFKDIFQEIFDKHYKTDFDKNKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTIKSNL 445          
BLAST of CF835040 vs. ExPASy Swiss-Prot
Match: IDHP_HUMAN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 5.300e-70
Identity = 126/185 (68.11%), Postives = 147/185 (79.46%), Query Frame = 3
Query:    3 KIQDLFQEVYEANWKSPFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 551
            + +D+FQE+++ ++K+ F+   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  C+ TVESG MTKDLA  IHG    +  EH+LNT +F+D +  +L
Sbjct:  261 RFKDIFQEIFDKHYKTDFDKNKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQMLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTIKSNL 445          
BLAST of CF835040 vs. ExPASy Swiss-Prot
Match: IDHP_BOVIN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 9.040e-70
Identity = 126/185 (68.11%), Postives = 146/185 (78.92%), Query Frame = 3
Query:    3 KIQDLFQEVYEANWKSPFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 551
            + +D+FQ ++E ++K+ F+   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  C+ TVESG MTKDLA  IHG    +  EH+LNT +F+D +  +L
Sbjct:  261 RFKDIFQAIFEKHYKTEFDKHKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 445          
BLAST of CF835040 vs. ExPASy Swiss-Prot
Match: IDHC_DICDI (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dictyostelium discoideum GN=idhC PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 2.908e-68
Identity = 128/190 (67.37%), Postives = 156/190 (82.11%), Query Frame = 3
Query:    3 KIQDLFQEVYEANWKSPFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGS--KMTREHYLNTEEFIDAVADDLRARLS 566
            + +D+FQE+YE  +K  F+ AGIWYEHRLIDDMVAYA+KSEGG+VWACKNYDGDVQSD +AQG+GSLGLMTSVL+  D  ++ AEA+HGTVTRH+R HQKG ETSTNSIASIFAW+RGL +RAKLDNN +LL F   LEA+CI  VESG MTKDLA+ + GS   + R  YLNTEE+I+ VA+ L ++L+
Sbjct:  223 RFKDIFQEIYEREYKVKFDTAGIWYEHRLIDDMVAYAMKSEGGFVWACKNYDGDVQSDAVAQGYGSLGLMTSVLLSAD--SLVAEASHGTVTRHFREHQKGRETSTNSIASIFAWTRGLEYRAKLDNNDKLLKFCHALEASCIDAVESGFMTKDLAICVKGSVENVKRTDYLNTEEYINKVAELLVSKLT 410          
BLAST of CF835040 vs. ExPASy Swiss-Prot
Match: IDH_MYCTU (Isocitrate dehydrogenase [NADP] OS=Mycobacterium tuberculosis GN=icd PE=3 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 4.643e-66
Identity = 124/186 (66.67%), Postives = 147/186 (79.03%), Query Frame = 3
Query:    9 QDLFQEVYEANWKSPFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS 566
            +D F+ VYE  +K+ FEAAG+ YEHRLIDDMVA  LK EGGYVWACKNYDGDVQSD +AQG+GSLGLMTSVL+  DGKT+EAEAAHGTVTRHYR +Q G  TSTN IASIFAW+RGL HR KLD    ++DF  KLE+  I TVESGKMTKDLA++I       + +LN+EEF+DA+AD+L   L+
Sbjct:  227 KDEFERVYEEEFKAQFEAAGLTYEHRLIDDMVAACLKWEGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLMTADGKTVEAEAAHGTVTRHYRQYQAGKPTSTNPIASIFAWTRGLQHRGKLDGTPEVIDFAHKLESVVIATVESGKMTKDLAILIG----PEQDWLNSEEFLDAIADNLEKELA 408          
The following BLAST results are available for this feature:
BLAST of CF835040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_HUMAN6.260e-7167.72Isocitrate dehydrogenase [NADP] cytoplasmic OS=Hom... [more]
IDHC_PONAB8.176e-7167.20Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pon... [more]
IDHP_PIG1.822e-7068.65Isocitrate dehydrogenase [NADP], mitochondrial (Fr... [more]
IDHP_RAT5.300e-7068.11Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_MOUSE5.300e-7068.11Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_MACFA5.300e-7068.11Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_HUMAN5.300e-7068.11Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_BOVIN9.040e-7068.11Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHC_DICDI2.908e-6867.37Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dic... [more]
IDH_MYCTU4.643e-6666.67Isocitrate dehydrogenase [NADP] OS=Mycobacterium t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06J04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835040 ID=CF835040; Name=CF835040; organism=Citrus sinensis; type=EST; length=648bp
GGAAGATTCAAGATTTATTTCAAGAGGTTTATGAGGCAAACTGGAAGTCA
CCCTTTGAAGCTGCTGGCATATGGTATGAACATCGTCTCATTGATGATAT
GGTAGCTTATGCTCTCAAAAGTGAAGGAGGTTATGTGTGGGCTTGCAAAA
ATTATGATGGAGATGTCCAGAGTGATTTCCTAGCTCAAGGGTTTGGATCT
CTTGGATTGATGACATCTGTACTGGTATGCCCTGATGGGAAGACAATTGA
AGCCGAAGCAGCCCATGGAACAGTTACCCGACACTACAGAGTTCATCAGA
AAGGTGGTGAAACTAGCACAAACAGCATAGCCTCCATCTTTGCTTGGTCA
CGAGGGCTTGCACATAGGGCGAAGTTGGACAACAATGCTAGGCTATTGGA
TTTTACTGAGAAACTAGAAGCTGCATGTATTGGCACTGTTGAATCTGGGA
AGATGACCAAGGATCTTGCACTTATTATCCATGGATCTAAGATGACTAGG
GAACACTATCTGAATACTGAAGAGTTCATTGATGCTGTGGCCGACGATCT
AAGAGCAAGACTCTCTGGCAAAGCATGATTTTATGCTACACATTCAAAGG
TAAAGACTTGGGGAAGCTTCCTTTGGTTATCTTTTTCATATTATGCTG
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