CF835050

Overview
NameCF835050
Unique NameCF835050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:432..1148. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835050 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.808e-16
Identity = 85/255 (33.33%), Postives = 116/255 (45.49%), Query Frame = 3
Query:   42 MATPSIQQSA---FAGQTALRQS---NEFVRKVGVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR-----------------IXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 713
            MAT ++  S+   FA + A+RQS         VG +  G +       +TP     G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F + R L   EVI+ R+AMLGA+G + PE L K G+   E    WF+ G  I   G  +Y  +           ++  ++ LMGF E  R                 +                 F+PLG   D     ELK+KE+KNGRLAM ++
Sbjct:    1 MATQALVSSSSLTFAAE-AVRQSFRARSLPSSVGCSRKGLVR----AAATPPVKQGGVDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAI 238          
BLAST of CF835050 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15
Identity = 79/248 (31.85%), Postives = 111/248 (44.76%), Query Frame = 3
Query:   69 AFAGQTALRQSNEFVRKVGVADGGRITMRRTVK--------STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR-----------------IXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 713
            A    +++  S E  R++    G RI+   T K        STP  +  G +R  +    S+Q+ SYL G  PGD+G+D  GLS DPE    F + + L   EVI+ R+AMLGA G + PEIL K G+   E    WF+ G  I   G  +Y  +           ++  ++ LMGF E  R                 +                 F+PLG   D     ELK+KE+KNGRLAM ++
Sbjct:    5 ALISSSSISTSAEAARQI---IGSRISQSVTRKASFVVRAASTPP-VKQGANRQLWFA--SKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAI 236          
BLAST of CF835050 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.770e-14
Identity = 45/77 (58.44%), Postives = 49/77 (63.64%), Query Frame = 3
Query:  492 LIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA---FDPLGLADDPDQFAELKVKELKNGRLAMFSM 713
            LIHA+S+LAI A QV+LMG VEGYR                     FDPLGLADDPD F ELKVKE+KNGRLAM  M
Sbjct:    5 LIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGM 81          
BLAST of CF835050 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 49/158 (31.01%), Postives = 70/158 (44.30%), Query Frame = 3
Query:  231 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAM 704
            + P+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PE+L       G+  WF+AG  +                    L +    + +    E +R                  FDPL L  D  + A     E+KNGRLA+
Sbjct:  195 EPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGELDRSYPGFDPLNLTTDYTRAA-----EVKNGRLAL 322          
BLAST of CF835050 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.529e-12
Identity = 55/160 (34.38%), Postives = 73/160 (45.62%), Query Frame = 3
Query:  234 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFS 710
            +P YLTG   GD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+ +K G+      W+ AG  Q F+     ++    L H   I   W   +   G V    I                 F+PL  A  P Q  E K KEL NGRLAM +
Sbjct:   63 SPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFA--PTQ--EAKEKELANGRLAMLA 215          
BLAST of CF835050 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 63/227 (27.75%), Postives = 85/227 (37.44%), Query Frame = 3
Query:  123 GVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------------------IXXXXXXXXXXXXXXXXAFDPLGLA---------DDPDQFAELKVKELKNGRLAMFSM 713
            GV+   R  +     + P+  W     P   G  +   P +L G  PGD+G+D  GL  DP      RE E+IH RWAML  LG          G  +    WF+AGA            +P  +   S   +   Q++LMG+VE  R                                       FDPL LA          D D+   LK+ E+K+ RLAM +M
Sbjct:   39 GVSTTSRKLVVVAAAAAPKKSWI----PAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFV-------GQAWTGIPWFEAGA------------DPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAM 242          
BLAST of CF835050 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 57/189 (30.16%), Postives = 72/189 (38.10%), Query Frame = 3
Query:  237 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------------------IXXXXXXXXXXXXXXXXAFDPLGLA---------DDPDQFAELKVKELKNGRLAMFSM 713
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S   +   Q++LMG+VE  R                                       FDPL LA          D ++   LKV E+K+ RLAM +M
Sbjct:   68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAM 237          
BLAST of CF835050 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 64/212 (30.19%), Postives = 87/212 (41.04%), Query Frame = 3
Query:  198 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAM 704
            DRP +      ++P YL G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L+  GV      W  AG     +G   YLG P      +++ I   +V+++G++E  R                  FDPLGLA DP + A+L++ E+K+ RLAM
Sbjct:   51 DRPLWFP--GAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLT--GV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQR--NAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAM 247          
BLAST of CF835050 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 55/189 (29.10%), Postives = 73/189 (38.62%), Query Frame = 3
Query:  237 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------------------IXXXXXXXXXXXXXXXXAFDPLGLA---------DDPDQFAELKVKELKNGRLAMFSM 713
            P +L G  PGD+G+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S  ++   Q++LMG+VE  R                                       FDPL LA          D ++   LK+ E+K+ RLAM +M
Sbjct:   68 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAM 237          
The following BLAST results are available for this feature:
BLAST of CF835050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB23_PEA1.808e-1633.33Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB13_SOLLC7.596e-1531.85Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_EUGGR3.770e-1458.44Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
LH18_EUGGR2.069e-1231.01Light-harvesting complex I LH38 proteins (Fragment... [more]
CB24_ARATH3.529e-1234.38Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB4_SPIOL6.019e-1227.75Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4A_SOLLC7.861e-1230.16Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_ARATH3.901e-1130.19Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4B_SOLLC6.655e-1129.10Chlorophyll a-b binding protein CP24 10B, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06J11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06J11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835050 ID=CF835050; Name=CF835050; organism=Citrus sinensis; type=EST; length=718bp
GAAGCTTCACCATAAAAGGAAAAGCTTTCGCATAAGAACATATGGCAACC
CCTTCTATCCAACAATCAGCATTTGCTGGCCAGACCGCCTTGAGGCAATC
CAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGGCCGTATCACCA
TGAGGAGGACTGTCAAATCCACTCCCCAGAGCATCTGGTACGGCCCAGAC
CGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACTTGAC
TGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCAGCAG
ACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGA
TGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAA
GAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAA
TCTTCTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCAT
GCTCAGAGCATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTCATGGGTTT
TGTTGAAGGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACC
CACTTTACCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCC
GATCAATTTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGC
TATGTTCTCCATGTTTGG
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