CF835052

Overview
NameCF835052
Unique NameCF835052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835052 vs. ExPASy Swiss-Prot
Match: PPT1_YEAST (Serine/threonine-protein phosphatase T OS=Saccharomyces cerevisiae GN=PPT1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 2 
Query:   29 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 346
            + +F  A + Y++AI++    +  F++RA A  K+ NF  A+ D + AI+L+P   KAY R+A +CM L E++ A+  L       P D   T  +  C+  I EE
Sbjct:   25 EKHFLKAIEKYTEAIDLDSTQSIYFSNRAFAHFKVDNFQSALNDCDEAIKLDPKNIKAYHRRALSCMALLEFKKARKDLNVLLKAKPNDPAATKALLTCDRFIREE 130
[Close]
BLAST of CF835052 vs. ExPASy Swiss-Prot
Match: DNJC7_DICDI (DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 37/108 (34.26%), Postives = 59/108 (54.63%), Query Frame = 2 
Query:   17 EAFIDDYFELAYDLYSQAIEISPN----SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 328
            E F    ++ AYD +++A+ I P     +++L+++RA A + L   +EA+ D   A+ ++P+  KAY R+A   MK E YE A    EK  SL P +      IKE +
Sbjct:  244 EYFQSKNYQAAYDSFTEALSIDPKLETMNSQLYSNRAAALVHLNRISEAINDCTSAVTIDPNYGKAYIRRAQCQMKQENYEDAVRDYEKAQSLDPENGELQRNIKEAK 351
The following BLAST results are available for this feature:
BLAST of CF835052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PPT1_YEAST6.629e-1133.96Serine/threonine-protein phosphatase T OS=Saccharo... [more]
DNJC7_DICDI6.629e-1134.26DnaJ homolog subfamily C member 7 homolog OS=Dicty... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06J12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06J12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835052 ID=CF835052; Name=CF835052; organism=Citrus sinensis; type=EST; length=709bp
TGGAGAAGACCCCTAAGAGGCGTTCATCGACGACTACTTCGAGCTCGCCT
ACGATCTCTACTCGCAAGCCATTGAGATTAGCCCTAATAGCGCTGAGCTC
TTCGCCGACCGCGCTCAAGCCAGCATCAAACTCCAAAATTTCACTGAGGC
TGTTGCGGATGCGAACCGAGCAATTGAGTTGGAGCCTTCAATGTCTAAAG
CCTATTGGCGTAAAGCCACCGCTTGCATGAAGCTTGAAGAATATGAAACG
GCTAAGGTGGCACTAGAAAAAGGTGCTTCTCTAGCTCCAGGAGATTCGAG
ATTTACCAACTTAATCAAAGAATGTGAGGAGCGCATAGCAGAGGAAACTG
GTGAGTTACAAAAGCAGCCTTTGGAAACAGGCCCAACAAATGTTGTGTCA
ACTAACAACGTCCAGCCTGCGACGAACATTTCCTCAACTGAGGATGTTGA
GACAGTGATGGATGTTTCCAATGAGGCTGCGATGGCTGCACCAGCCAGAC
CAAAATACAGGCATGAATTTTACCAGAAGCCTGAGGAAGTAGTTGTTACT
GTGTTTGCAAAGGGCATACCTGCCAAAAATGTTACAGTTGACTTTGGGGA
ACAAATACTAAGTGTTAGTATTGATGTTCCTGGTGAAGAGGCATATCATT
TTCAACCTCGCTTATTTGGAAAGATAATACCTGCCAAATGCAGATATGAA
GTCCTCTCA
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