CF835058
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835058 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 9.125e-20 Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = -2 Query: 409 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 636 M I VKTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY + S LHLVL LRGG Sbjct: 1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76
BLAST of CF835058 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19 Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = -2 Query: 409 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 630 I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T DY I+ S LHLVL LRGG Sbjct: 3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 76
BLAST of CF835058 vs. ExPASy Swiss-Prot
Match: RS27A_DAUCA (40S ribosomal protein S27a (Fragment) OS=Daucus carota PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19 Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = -2 Query: 208 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGK 339 LAVLQFYKVD+SGKVQRLRKECPN ECGAGTFMANHFDRHYCGK Sbjct: 24 LAVLQFYKVDESGKVQRLRKECPNGECGAGTFMANHFDRHYCGK 67
BLAST of CF835058 vs. ExPASy Swiss-Prot
Match: RS27A_CHICK (40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A PE=3 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 1.009e-18 Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = -2 Query: 181 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 339 LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSEECGAGVFMASHFDRHYCGKCCLTYCFNK 76
BLAST of CF835058 vs. ExPASy Swiss-Prot
Match: RS27A_HUMAN (40S ribosomal protein S27a OS=Homo sapiens GN=RPS27A PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.318e-18 Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = -2 Query: 181 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 339 LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76
BLAST of CF835058 vs. ExPASy Swiss-Prot
Match: RS27A_CAVPO (40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.318e-18 Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = -2 Query: 181 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 339 LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76
BLAST of CF835058 vs. ExPASy Swiss-Prot
Match: RS27A_BOVIN (40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.318e-18 Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = -2 Query: 181 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 339 LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76
BLAST of CF835058 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.318e-18 Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = -2 Query: 409 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 636 M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I S LHLVL LRGG Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76
BLAST of CF835058 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.318e-18 Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = -2 Query: 409 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 636 M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I S LHLVL LRGG Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76
BLAST of CF835058 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.318e-18 Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = -2 Query: 409 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 636 M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I S LHLVL LRGG Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 The following BLAST results are available for this feature:
BLAST of CF835058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 123
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835058 ID=CF835058; Name=CF835058; organism=Citrus sinensis; type=EST; length=670bpback to top |