CF835059

Overview
NameCF835059
Unique NameCF835059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835059_ssr315 microsatellite CF835059_ssr315:315..326. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10133 contig Csv1_Contig10133:11..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: RS37_YEAST (40S ribosomal protein S31 OS=Saccharomyces cerevisiae GN=UBI3 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 3 
Query:  333 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTY 479
            LAVL +YKVD  GKV +LR+EC N  CGAG F+ANH DR YCGKC   Y
Sbjct:   24 LAVLSYYKVDAEGKVTKLRRECSNPTCGAGVFLANHKDRLYCGKCHSVY 72
[Close]
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: RS27A_DICDI (40S ribosomal protein S27a OS=Dictyostelium discoideum GN=ubqC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.195e-11
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 3 
Query:  333 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYV 482
            LAVL++YK D++GK++R+ +ECP   CGAG FMA H +R YCGKC  T V
Sbjct:   25 LAVLKYYKFDENGKIKRVLRECPAETCGAGVFMAQHANRQYCGKCHSTLV 74
[Close]
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 3 
Query:   36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263
            M LF++TLTG    L V   +T+ +VKAKI+  EGIP  +Q LI+   +LE+   L DYNI +  TL LVL +RGG
Sbjct:   28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYNISEGCTLKLVLAMRGG 103
The following BLAST results are available for this feature:
BLAST of CF835059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
RS37_YEAST1.411e-1265.3140S ribosomal protein S31 OS=Saccharomyces cerevis... [more]
RS27A_DICDI1.195e-1158.0040S ribosomal protein S27a OS=Dictyostelium discoi... [more]
ANUB1_HUMAN4.539e-1148.68AN1-type zinc finger and ubiquitin domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06J16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835059 ID=CF835059; Name=CF835059; organism=Citrus sinensis; type=EST; length=672bp
CTGGAAATTTGCTGGGTCTCTCCTCATCTGCAGCCATGCACCTCTTCGTG
AAAACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCGGACAC
CATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGG
ACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACC
CTAGCCGACTACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCG
TCTCCGTGGTGGCGCGAAGAAGCGTAAGAAGAAGACCTACACCAAGCCGA
AAAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTT
TACAAGGTCGATGATTCTGGAAAGGTCCAGAGGCTGAGGAAGGAGTGTCC
GAATGCTGAGTGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGC
ACTACTGCGGCAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGT
GATTGATCGAGATTAGGTGGTTGTTTTGCTATTTTTAATTAGTATTAATT
ACTATGGTTTTTGTGGTTCAAAAATTATGACTCTTTCGTAATTTTGTTTG
ACTATATACTTGTTTGCTTGAGCGTTTTAATTAAATGGTTATCTGTTTTA
AATTTTAAAAAAAAAAAAAAAA
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