CF835062

Overview
NameCF835062
Unique NameCF835062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.054e-25
Identity = 57/148 (38.51%), Postives = 88/148 (59.46%), Query Frame = -3
Query:  221 PARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTA 664
            P  KRL ++   L      GIS  P+ +N+  W   I G   T ++   +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+ +WS +YDV  IL SIQSLL +PN +SP N+ AA ++ +N   + + ++E   +  T+
Sbjct:   30 PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTS 176          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.682e-25
Identity = 57/137 (41.61%), Postives = 84/137 (61.31%), Query Frame = -3
Query:  245 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 655
            KRL ++   L      GIS  P+ +N+  W   I G   T ++   +KL+L+F   YP   PTV+FV+  FHPN+ + G+ICLDIL+++WS +YDV  IL S+QSLL +PN  SP N  AA ++ +N+  Y + + E
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELW-QNQTAYKKHLHE 168          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.682e-25
Identity = 56/140 (40.00%), Postives = 86/140 (61.43%), Query Frame = -3
Query:  245 PARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 664
            P  KRL ++   L      GIS  P+ +N+  W   I G   T ++   +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN +SP N+ AA ++ +N   + + ++E
Sbjct:   30 PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQE 168          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.682e-25
Identity = 53/136 (38.97%), Postives = 81/136 (59.56%), Query Frame = -3
Query:  248 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 655
            KR+ ++   +  DPP   S  P+ +N+  W + I GP  + ++GG F L + F+ +YP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  + +N+ E++R  R
Sbjct:   89 KRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLQNREEHDRIAR 224          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.503e-25
Identity = 52/113 (46.02%), Postives = 76/113 (67.26%), Query Frame = -3
Query:  245 NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 583
            NNI  W AVI GPD TP++GG F L+++F  DYP KPP   F + ++HPNI  +GSIC++IL+++W+P   V  +L SI  LL  PNP+ P   E  ++F  N+ ++++R RE
Sbjct:   34 NNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRARE 146          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 56/140 (40.00%), Postives = 86/140 (61.43%), Query Frame = -3
Query:  245 PARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 664
            P  KRL ++   L      GIS  P+ +N+  W   I G   T ++   +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN +SP N+ AA ++ +N   + + ++E
Sbjct:   30 PVGKRLQQELMILMTSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQE 168          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 57/155 (36.77%), Postives = 91/155 (58.71%), Query Frame = -3
Query:  230 LMRDFKRLQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKR-EYNRRVREIVEQS 649
            L R    L ++P  G S G   DN++  W  +I GP DT ++GG FK  L F +DYP +PP ++F++ ++HPN+  +G +C+ IL             + +W PI+ V  I+ S+ S+L DPN +SPAN +AA+ + E++  E+ R+V   V +S
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKS 164          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 57/155 (36.77%), Postives = 91/155 (58.71%), Query Frame = -3
Query:  230 LMRDFKRLQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKR-EYNRRVREIVEQS 649
            L R    L ++P  G S G   DN++  W  +I GP DT ++GG FK  L F +DYP +PP ++F++ ++HPN+  +G +C+ IL             + +W PI+ V  I+ S+ S+L DPN +SPAN +AA+ + E++  E+ R+V   V +S
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKS 164          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 57/155 (36.77%), Postives = 91/155 (58.71%), Query Frame = -3
Query:  230 LMRDFKRLQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKR-EYNRRVREIVEQS 649
            L R    L ++P  G S G   DN++  W  +I GP DT ++GG FK  L F +DYP +PP ++F++ ++HPN+  +G +C+ IL             + +W PI+ V  I+ S+ S+L DPN +SPAN +AA+ + E++  E+ R+V   V +S
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKS 164          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 57/155 (36.77%), Postives = 91/155 (58.71%), Query Frame = -3
Query:  230 LMRDFKRLQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKR-EYNRRVREIVEQS 649
            L R    L ++P  G S G   DN++  W  +I GP DT ++GG FK  L F +DYP +PP ++F++ ++HPN+  +G +C+ IL             + +W PI+ V  I+ S+ S+L DPN +SPAN +AA+ + E++  E+ R+V   V +S
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKS 164          
The following BLAST results are available for this feature:
BLAST of CF835062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
UBE2C_HUMAN2.054e-2538.51Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBE2C_XENLA2.682e-2541.61Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBE2C_BOVIN2.682e-2540.00Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBCD2_DROME2.682e-2538.97Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UBC31_ARATH3.503e-2546.02Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBE2C_MOUSE5.975e-2540.00Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]
UB2G1_RAT5.975e-2536.77Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE5.975e-2536.77Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_MACFA5.975e-2536.77Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]
UB2G1_HUMAN5.975e-2536.77Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06J18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835062 ID=CF835062; Name=CF835062; organism=Citrus sinensis; type=EST; length=699bp
TTTTTTTTTTTTTTTGAACATGAAACATGGGAAATCATATAAATTCCTCT
CAAATTGGTACATAAAATTCTATTGTACGCAAGCTCAAAGGCACACAATA
CTGAAAGTAGTACTATATTATAATATGGATTAAATAGCTTTTAACATTCA
TATTTGGGAGGGGTAGCAAGACAACTCTGCTTGGTTTTTAATGAGGCAGT
GAATGAGAATGAAGTTAATCTGCTGTCCAGCTCTGTTCCACTATTTCCCT
TACTCTTCTGTTGTATTCACGCTTGTTCTCACTAAACATCCGAGCAGCTT
CTGAATTTGCAGGAGAATTTGGGTTGGGATCACAGAGCAATGACTGAATA
GATGTGAGTATAGCTGCCACATCATATATAGGACTCCACTGATTTTGCAA
AATATCCAGACAAATACTTCCATCGGCATATATATTTGGATGAAACATCC
TAGAAACAAATCGCACAGTTGGCGGTTTGTTTGGATAATCCTCCGTAAAC
TGAAGGGTCAACTTGAACGTACCTCCATCCCATGGCGTATCATCAGGACC
AAATATCACAGCATTCCAGAGCATAATATTGTTGTCTTGGGGAGCCCCAC
TGATGCCTGCAGGCGGGTCTTGCTGCAACCTTTTAAAATCTCTCATCAGC
CTCTTCCTTGCAGGTGTCGACATCGTCACCACCCACAAACTTCAGAAAT
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