CF835062

Overview
NameCF835062
Unique NameCF835062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.019e-24
Identity = 55/153 (35.95%), Postives = 88/153 (57.52%), Query Frame = -3
Query:  230 LMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--------WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF-----SENKREYNRRVREIVEQS 649
            LM +++ L ++P      +  +NN+  W+ ++ GP DT ++GG FK  + F  +YP +PP + F S M+HPNIY+DG +C+ IL           WSP+  +  IL S+ SLL +PN +SPAN +AA+ +      E+   Y   V+  V++S
Sbjct:    6 LMAEYRHLTENPSENFKVSVNENNMTEWDVILKGPADTLYEGGLFKAKIGFPPNYPYEPPRLTFTSEMWHPNIYSDGRVCISILHGDNAEEQGMTWSPVQKIDTILLSVISLLNEPNTDSPANVDAAKSYRRFVHKEDLESYPMEVKRTVKKS 158          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.019e-24
Identity = 60/179 (33.52%), Postives = 100/179 (55.87%), Query Frame = -3
Query:  152 LMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--------WSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR-----MFSENKREYNRRVREIVEQSWTAD*LHSHSLPH*KPSRVVLLPLPN 649
            L+ ++K L  +P      +  ++N+  W+ ++ GP DT ++GG FK  + F   YP +PP + F S M+HPNIY+DG +C+ IL           WSP   +  +L S+ SLL +PNP+SPAN +AA+     ++ E+   Y   V++ V++S   D   +  + + K   V +LP+P+
Sbjct:    6 LLAEYKNLIVNPSEHFKISVNEDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKYPYEPPRLTFTSEMWHPNIYSDGKLCISILHGDNAEEQGMTWSPAQKIDTVLLSVISLLNEPNPDSPANVDAAKSYRKYLYKEDLESYPMEVKKTVKKS--LDECSAEDIEYFKNVPVNVLPVPS 182          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.019e-24
Identity = 56/153 (36.60%), Postives = 88/153 (57.52%), Query Frame = -3
Query:  230 LMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--------WSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR-----MFSENKREYNRRVREIVEQS 649
            L+ +++ L ++P      +  +NNI  W+ ++ GP DT ++GG FK  + F  +YP  PP + F S M+HPNIY DG +C+ IL           WSP   +  IL S+ SLL +PNP+SPAN +AA+     ++ E+   Y   V++ V++S
Sbjct:    6 LIAEYRHLIENPSENFKISVNENNITEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPKLTFTSEMWHPNIYPDGRLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKYVYKEDLESYPMEVKKTVKKS 158          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.270e-24
Identity = 54/138 (39.13%), Postives = 87/138 (63.04%), Query Frame = -3
Query:  260 ARKRLMRDFKRLQQDPPAG--ISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF-SENKREYN 661
            +R RL +++K +Q++  A   I     D NI  W A+I GP +TP++GG F+L     E YP +PP VRF++++FHPN+ +  G ICLDIL+N WSP + + ++  +I +L+  P P+SP N ++  +  S + R +N
Sbjct:    4 SRARLFKEYKEVQREKVADPDIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGFN 141          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.270e-24
Identity = 54/150 (36.00%), Postives = 85/150 (56.67%), Query Frame = -3
Query:  245 SLWVVTMSTPAR-KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 691
            S WV   S  A  KR+ R+   L  DPP   S  P+ +N+  W A I GP  TP++GG F L + F  DYP KPP + F +R++H N+   G + ++IL++ WSP   +  +L +I+S+   P P SPA    AR++  ++ +++   +E
Sbjct:   26 SSWVAKTSVSASGKRIQREMAELNIDPPPDCSAGPKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPALPVIARLYLTDREKHDEVAKE 175          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.965e-24
Identity = 56/153 (36.60%), Postives = 86/153 (56.21%), Query Frame = -3
Query:  230 LMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--------WSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR-----MFSENKREYNRRVREIVEQS 649
            LM +++ L ++P      +  +N++  W+ ++ GP DT ++GG FK  + F  +YP  PP + F S M+HPNIY DG +C+ IL           WSP   +  IL S+ SLL +PNP+SPAN +AA+     M  E+   Y   V+  V++S
Sbjct:    6 LMAEYRHLIENPSENFKISVNENDMTEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPRLTFTSEMWHPNIYPDGKLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKLMHKEDLESYPMEVKRTVKKS 158          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UBE2S_DROYA (Ubiquitin-conjugating enzyme E2 S OS=Drosophila yakuba GN=GE15576 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.628e-24
Identity = 51/149 (34.23%), Postives = 86/149 (57.72%), Query Frame = -3
Query:  236 VVTMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 682
            V  +S    +++MR+ + ++  PP GI     ++++    A+I GP  TP+  G F++ L   +D+P  PP   F++++FHPN+ A+G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA +M  E   +Y++R R + E
Sbjct:    8 VENLSPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTE 156          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UBE2S_DROER (Ubiquitin-conjugating enzyme E2 S OS=Drosophila erecta GN=GG18165 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.628e-24
Identity = 51/149 (34.23%), Postives = 86/149 (57.72%), Query Frame = -3
Query:  236 VVTMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 682
            V  +S    +++MR+ + ++  PP GI     ++++    A+I GP  TP+  G F++ L   +D+P  PP   F++++FHPN+ A+G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA +M  E   +Y++R R + E
Sbjct:    8 VENLSPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTE 156          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UB2R2_RABIT (Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus cuniculus GN=UBE2R2 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.628e-24
Identity = 60/165 (36.36%), Postives = 95/165 (57.58%), Query Frame = -3
Query:  221 TPARKRLMRDFKRLQQDPPAGISGAPQD-NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSE--NKREYNRRVREIVEQSWTA 667
            T ++K LM + K LQ++P  G      D +++  W   IFGP +T ++GG FK  ++F  DYP  PPT RF+++M+HPNIY +G +C+ IL               +W+P  +V  IL S+ SLL +PN  SPAN +A+ MF +  + +  ++   EI+ +  +A
Sbjct:    7 TSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAEIIRKQVSA 171          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UB2R2_MOUSE (Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus GN=Ube2r2 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.628e-24
Identity = 60/165 (36.36%), Postives = 95/165 (57.58%), Query Frame = -3
Query:  221 TPARKRLMRDFKRLQQDPPAGISGAPQD-NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSE--NKREYNRRVREIVEQSWTA 667
            T ++K LM + K LQ++P  G      D +++  W   IFGP +T ++GG FK  ++F  DYP  PPT RF+++M+HPNIY +G +C+ IL               +W+P  +V  IL S+ SLL +PN  SPAN +A+ MF +  + +  ++   EI+ +  +A
Sbjct:    7 TSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAEIIRKQVSA 171          
The following BLAST results are available for this feature:
BLAST of CF835062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
UBC_ASFP41.019e-2435.95Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFM21.019e-2433.52Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFB71.019e-2436.60Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC21_ARATH2.270e-2439.13Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
COP10_ARATH2.270e-2436.00Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UBC_ASFWA2.965e-2436.60Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBE2S_DROYA8.628e-2434.23Ubiquitin-conjugating enzyme E2 S OS=Drosophila ya... [more]
UBE2S_DROER8.628e-2434.23Ubiquitin-conjugating enzyme E2 S OS=Drosophila er... [more]
UB2R2_RABIT8.628e-2436.36Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus ... [more]
UB2R2_MOUSE8.628e-2436.36Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06J18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835062 ID=CF835062; Name=CF835062; organism=Citrus sinensis; type=EST; length=699bp
TTTTTTTTTTTTTTTGAACATGAAACATGGGAAATCATATAAATTCCTCT
CAAATTGGTACATAAAATTCTATTGTACGCAAGCTCAAAGGCACACAATA
CTGAAAGTAGTACTATATTATAATATGGATTAAATAGCTTTTAACATTCA
TATTTGGGAGGGGTAGCAAGACAACTCTGCTTGGTTTTTAATGAGGCAGT
GAATGAGAATGAAGTTAATCTGCTGTCCAGCTCTGTTCCACTATTTCCCT
TACTCTTCTGTTGTATTCACGCTTGTTCTCACTAAACATCCGAGCAGCTT
CTGAATTTGCAGGAGAATTTGGGTTGGGATCACAGAGCAATGACTGAATA
GATGTGAGTATAGCTGCCACATCATATATAGGACTCCACTGATTTTGCAA
AATATCCAGACAAATACTTCCATCGGCATATATATTTGGATGAAACATCC
TAGAAACAAATCGCACAGTTGGCGGTTTGTTTGGATAATCCTCCGTAAAC
TGAAGGGTCAACTTGAACGTACCTCCATCCCATGGCGTATCATCAGGACC
AAATATCACAGCATTCCAGAGCATAATATTGTTGTCTTGGGGAGCCCCAC
TGATGCCTGCAGGCGGGTCTTGCTGCAACCTTTTAAAATCTCTCATCAGC
CTCTTCCTTGCAGGTGTCGACATCGTCACCACCCACAAACTTCAGAAAT
back to top