CF835079

Overview
NameCF835079
Unique NameCF835079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1776 contig Csv1_Contig1776:633..1200. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.574e-24
Identity = 45/110 (40.91%), Postives = 74/110 (67.27%), Query Frame = 1
Query:   94 DGQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 423
            +G+V+  H+   +  K+  A  + +L+++ FTA+WC PCRFI+P+F  +A K+T VVF K+D+DE + VA  + + ++PTF F+K G  +D+VVGA K  +  K+ +H G
Sbjct:    4 EGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKHGG 113          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.574e-24
Identity = 47/108 (43.52%), Postives = 75/108 (69.44%), Query Frame = 1
Query:   97 GQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 420
            G+V+  H+  ++  KL AA  + +L+++ FTA WC PCRFI+P+F  LA K+  VVF KVD+DE   VA  +++ ++PTF ++K  +++DKVVGA K  +E K+ +H+
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHS 118          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 9.893e-24
Identity = 49/111 (44.14%), Postives = 78/111 (70.27%), Query Frame = 1
Query:   94 DGQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKY-TKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 423
            +GQV+G H+   +  +L+ A  + +L+++ FTA+WC PCR I+P+F +LA K+ +  +F KVD+DE + VA  + + ++PTF FIK G+ VDK+VGA+K  L+ KI +H G
Sbjct:    5 EGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHTG 115          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.910e-23
Identity = 49/111 (44.14%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   94 DGQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKY-TKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 423
            +GQV+G H    +  +L+ A ++ +L+++ FTA+WC PCR I+P+F +LA K+ +  +F KVD+DE ++VA  + + ++PTF  IK+G  VDKVVGA K  L   IA+H G
Sbjct:    5 EGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHTG 115          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.428e-22
Identity = 46/109 (42.20%), Postives = 72/109 (66.06%), Query Frame = 1
Query:   94 DGQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 420
            + QV+  H+  E+  K   A  + +L+++ FTA+WCGPCR I+P  + LA K+  V F KVD+D+ +DVA  + + ++P+F  +K G+EV+++VGA K  L  KIA HA
Sbjct:    4 EAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVHA 112          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.866e-22
Identity = 46/108 (42.59%), Postives = 72/108 (66.67%), Query Frame = 1
Query:   94 DGQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 417
            +G+V+  H+  ++  KL AA  + +L+++ FTATWC PCRFI+P+F +LA K+  VVF KVD+DE   VA  + + ++PTF F+K G+  + VVGA K  +   + +H
Sbjct:    4 EGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKH 111          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TRXH9_ARATH (Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.182e-22
Identity = 44/104 (42.31%), Postives = 73/104 (70.19%), Query Frame = 1
Query:   97 GQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 408
            G V  I +   ++ KL  A R  ++V+  F+ATWCGPC+ ++P F  L+ K++ ++FL VD+DE  D ++ W+I + PTFFF+KNG+++ K+VGA+K  L++K+
Sbjct:   23 GNVHLITTKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKV 126          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.518e-21
Identity = 47/121 (38.84%), Postives = 75/121 (61.98%), Query Frame = 1
Query:   46 QRKQAGADREALSGLRDGQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 408
            +R     D E    L  G V  I +   ++ KL+ A+R  ++V+  F+A WCGPC+ I+P +  L+  Y  ++FL +D+DE  D +  W I + PTFFF+++G++VDK+VGA+K  L +KI
Sbjct:    7 KRNHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKI 127          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.337e-20
Identity = 44/86 (51.16%), Postives = 61/86 (70.93%), Query Frame = 1
Query:  160 ALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 417
            A RL+I+ F A WCGPCR ISP+F   +++Y    FLKV+ D ARD+  R+NI ++PTF F+KN ++VD V GA++ A+  KI QH
Sbjct:   21 ANRLIIIDFFANWCGPCRMISPIFEQFSAEYGNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMVRGANQQAIAEKIRQH 106          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.746e-20
Identity = 46/102 (45.10%), Postives = 70/102 (68.63%), Query Frame = 1
Query:  103 VMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 408
            V  + + ++FE +L AA    +LV++ F+ATWCGPC+ I P F +L  K+  VVF+++D+D+A+DVAT  ++  +PTF F KNGK+V +  GA+K  LE  I
Sbjct:    2 VKSVGNLADFEAELKAAGE--KLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETI 101          
The following BLAST results are available for this feature:
BLAST of CF835079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
TRXH5_ARATH7.574e-2440.91Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH1_BRANA7.574e-2443.52Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
TRXH4_ARATH9.893e-2444.14Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_BRANA4.910e-2344.14Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
TRXH_FAGES1.428e-2242.20Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH3_ARATH1.866e-2242.59Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH9_ARATH3.182e-2242.31Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_POPJC3.518e-2138.84Thioredoxin H-type OS=Populus jackii PE=1 SV=1[more]
NGLY1_CAEEL1.337e-2051.16Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
THIO_CHICK1.746e-2045.10Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06K03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835079 ID=CF835079; Name=CF835079; organism=Citrus sinensis; type=EST; length=568bp
CGGCTGCGTAAAGAAAGGGAGCTAAAAAATTTTGAACGTGAGAGGCAAAG
AAAACAAGCTGGAGCCGATCGAGAAGCTTTGTCTGGTTTAAGGGATGGGC
AAGTAATGGGTATTCACTCAGCTAGTGAATTTGAAACTAAGTTGAATGCT
GCTACTAGAGCATTGCGCCTGGTGATTCTGTACTTTACTGCAACATGGTG
CGGGCCCTGCCGTTTCATTTCTCCTCTTTTTACAAACTTAGCCTCAAAAT
ACACGAAGGTTGTTTTCTTGAAAGTTGACATAGATGAGGCAAGAGATGTA
GCTACACGCTGGAATATTGGTTCTGTTCCCACCTTTTTCTTCATAAAGAA
TGGTAAGGAAGTTGACAAGGTTGTCGGGGCTGATAAAAGTGCACTTGAAA
GGAAGATTGCACAACATGCTGGCCAGTAAAACCACTCCTGAATAATGAGA
ACTTTAGAGTAATCTCTGCTTGCAAGCCTTTCCTACCCATTTGTTTGCCA
AGCAAATAATGTCTGATAAAATTTCAGTATTTGAATAAAAATAACTTGCT
CCAAAAAAAAAAAAAAAA
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