CF835079

Overview
NameCF835079
Unique NameCF835079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1776 contig Csv1_Contig1776:633..1200. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: GLRX3_XENTR (Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 31/106 (29.25%), Postives = 63/106 (59.43%), Query Frame = 1 
Query:  103 VMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 420
            V+   SA +FE  +  + ++L +V  +F A W   C  ++ +   LA +  +V+F+K++ +   +V+ ++ + SVPTF F KN +++D++ GA    L +++ +HA
Sbjct:    4 VLEAGSAGQFEQLIQNSAKSLTVV--HFWAPWAPQCTQMNEVMAELAKEQPQVMFVKLEAEAVPEVSEKYEVTSVPTFLFFKNSQKIDRLDGAHAPELTKRVQRHA 107
The following BLAST results are available for this feature:
BLAST of CF835079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GLRX3_XENTR9.604e-1129.25Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06K03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835079 ID=CF835079; Name=CF835079; organism=Citrus sinensis; type=EST; length=568bp
CGGCTGCGTAAAGAAAGGGAGCTAAAAAATTTTGAACGTGAGAGGCAAAG
AAAACAAGCTGGAGCCGATCGAGAAGCTTTGTCTGGTTTAAGGGATGGGC
AAGTAATGGGTATTCACTCAGCTAGTGAATTTGAAACTAAGTTGAATGCT
GCTACTAGAGCATTGCGCCTGGTGATTCTGTACTTTACTGCAACATGGTG
CGGGCCCTGCCGTTTCATTTCTCCTCTTTTTACAAACTTAGCCTCAAAAT
ACACGAAGGTTGTTTTCTTGAAAGTTGACATAGATGAGGCAAGAGATGTA
GCTACACGCTGGAATATTGGTTCTGTTCCCACCTTTTTCTTCATAAAGAA
TGGTAAGGAAGTTGACAAGGTTGTCGGGGCTGATAAAAGTGCACTTGAAA
GGAAGATTGCACAACATGCTGGCCAGTAAAACCACTCCTGAATAATGAGA
ACTTTAGAGTAATCTCTGCTTGCAAGCCTTTCCTACCCATTTGTTTGCCA
AGCAAATAATGTCTGATAAAATTTCAGTATTTGAATAAAAATAACTTGCT
CCAAAAAAAAAAAAAAAA
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