CF835079

Overview
NameCF835079
Unique NameCF835079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1776 contig Csv1_Contig1776:633..1200. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.251e-18
Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 1
Query:   88 LRDGQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALE 399
            LRD   +  H  ++ + +L  A+   +LV+L F ATWCGPC+ ISP    L++++   VV LKVD+DE  D+A  +NI S+PTF F+KNG +V++  GA+   LE
Sbjct:    5 LRDSTNLHFHLQADLDGQLTKASG--KLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLE 107          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 2.135e-18
Identity = 46/103 (44.66%), Postives = 69/103 (66.99%), Query Frame = 1
Query:  103 VMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTF-FFIKNGKEVDKVVGADKSALERKI 408
            V  I S + F+  L+AA    +LV++ F+ATWCGPC+ I P F +L+ KY+ V+FL+VD+D+ +DVA+   +  +PTF FF K G++V +  GA+K  LE  I
Sbjct:    2 VKQIESKTAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATI 102          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.788e-18
Identity = 46/103 (44.66%), Postives = 65/103 (63.11%), Query Frame = 1
Query:  112 IHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 420
            I S   F+  L AA    +LV++ F+ATWCGPC+ I P F +L  KY+ VVFL+VD+D+ +DVA    +  +PTF F K G++V +  GA+K  LE  I + A
Sbjct:    5 IESKEAFQEALAAAGD--KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATITEFA 105          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.641e-18
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 1
Query:  103 VMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 408
            V  I S + F+  L+ A    +LV++ F+ATWCGPC+ I P F +L+ KY+ VVFL+VD+D+ +DVA+   +  +PTF F K G++V +  GA+K  LE  I
Sbjct:    2 VKQIESKAAFQEALDDAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 6.211e-18
Identity = 40/98 (40.82%), Postives = 67/98 (68.37%), Query Frame = 1
Query:  124 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 417
            +EF  +L+ A    +L+++ F+ATWCGPC+ I P F ++  KY  VVF+++D+D+A+DVA+  ++  +PTF F KN ++V +  GA+K  LE  I ++
Sbjct:    9 TEFRAELSNA--GSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKY 104          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.211e-18
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  166 RLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 417
            RL+I+ F A WCGPCR ISP F  L+ ++    FLKV+ D ARD+  R++I ++PTF F KN ++VD V GA++SA+   I +H
Sbjct:   23 RLIIVDFFANWCGPCRMISPAFERLSMEFGNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVDSVRGANESAIISTIRKH 106          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.384e-17
Identity = 43/101 (42.57%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  118 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 420
            +ASEF++    A    +LV++ F ATWCGPC+ I+P+    + +Y +  F K+D+DE  DVA +  + ++PT    KNGKEV KVVGA+ +A+++ IA +A
Sbjct:    7 TASEFDS----AIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIAANA 103          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.384e-17
Identity = 44/103 (42.72%), Postives = 68/103 (66.02%), Query Frame = 1
Query:  112 IHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 420
            + S +EF++ ++       LVI+ F A WCGPC+ I+P +   +  YTK+VF+KVD+DE  +V  + NI S+PTF   KNG  VD ++GA+ SAL++ I ++A
Sbjct:    5 VTSQAEFDSIISQN----ELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 103          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 1.807e-17
Identity = 44/109 (40.37%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   97 GQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 420
            G V+ I S + ++ +L       + +++ FTATWCGPC+ I+PLF  L++ Y  KV+FLKVD+D    VA    I ++PTF   K+G + D +VGA +  L+  +A+HA
Sbjct:    3 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHA 111          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.807e-17
Identity = 43/102 (42.16%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  103 VMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 408
            V  I S S F+  L++A    +LV++ F+ATWCGPC+ I P F  L+ K+  VVF++VD+D+ +D+A    +  +PTF F K G++V +  GA+K  LE  I
Sbjct:    2 VKQIESKSAFQEVLDSAGD--KLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
The following BLAST results are available for this feature:
BLAST of CF835079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
THIO2_DROME1.251e-1843.81Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]
THIO_PONAB2.135e-1844.66Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
THIO_RAT2.788e-1844.66Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]
THIO_MACMU3.641e-1844.12Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
THIO_OPHHA6.211e-1840.82Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
NGLY1_CAEBR6.211e-1848.81Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TRX1_YEAST1.384e-1742.57Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
THIO_PLAF71.384e-1742.72Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
TRXH_CHLRE1.807e-1740.37Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]
THIO_RABIT1.807e-1742.16Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06K03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835079 ID=CF835079; Name=CF835079; organism=Citrus sinensis; type=EST; length=568bp
CGGCTGCGTAAAGAAAGGGAGCTAAAAAATTTTGAACGTGAGAGGCAAAG
AAAACAAGCTGGAGCCGATCGAGAAGCTTTGTCTGGTTTAAGGGATGGGC
AAGTAATGGGTATTCACTCAGCTAGTGAATTTGAAACTAAGTTGAATGCT
GCTACTAGAGCATTGCGCCTGGTGATTCTGTACTTTACTGCAACATGGTG
CGGGCCCTGCCGTTTCATTTCTCCTCTTTTTACAAACTTAGCCTCAAAAT
ACACGAAGGTTGTTTTCTTGAAAGTTGACATAGATGAGGCAAGAGATGTA
GCTACACGCTGGAATATTGGTTCTGTTCCCACCTTTTTCTTCATAAAGAA
TGGTAAGGAAGTTGACAAGGTTGTCGGGGCTGATAAAAGTGCACTTGAAA
GGAAGATTGCACAACATGCTGGCCAGTAAAACCACTCCTGAATAATGAGA
ACTTTAGAGTAATCTCTGCTTGCAAGCCTTTCCTACCCATTTGTTTGCCA
AGCAAATAATGTCTGATAAAATTTCAGTATTTGAATAAAAATAACTTGCT
CCAAAAAAAAAAAAAAAA
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