CF835079

Overview
NameCF835079
Unique NameCF835079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1776 contig Csv1_Contig1776:633..1200. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.807e-17
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 1
Query:  166 RLVILYFTATWCGPCRFISPLFTNLASKYTK-VVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALE 399
            +LV+L F ATWCGPC+ ISP    L+++Y   VV LKVD+DE  D+A  +NI S+PTF F+KNG +V++  GA+   LE
Sbjct:   21 KLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAQRLE 99          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.026e-17
Identity = 34/84 (40.48%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  166 RLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 417
            +++IL F ATWCGPC+ I+PL+  LA+ +  ++F KVD+DEA D+ +++++  +PTF F KNG  ++ + G  +  L +K+ +H
Sbjct:   28 KIIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEH 111          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TXL1_SCHPO (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe GN=txl1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.968e-17
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  190 ATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIA 411
            A WCGPC+ ISPLF+ LASKY   K VF KV++DE R +A+   + ++PTF F +NGK++D + GA+  AL+ K+A
Sbjct:   28 ADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALKEKVA 103          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.171e-16
Identity = 39/89 (43.82%), Postives = 61/89 (68.54%), Query Frame = 1
Query:  139 KLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKY--TKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALE 399
            + N  T + +++I+ F ATWCGPCR ISP+F   + KY    +VF KVD+D A D++    I ++PTF   K+G+++D++VGA+ +ALE
Sbjct:   10 EFNKLTNSGKIIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANPTALE 98          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 9.916e-16
Identity = 36/93 (38.71%), Postives = 61/93 (65.59%), Query Frame = 1
Query:  142 LNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 420
            L AA +  +L++  F ATWCGPC+ ++P    +A +  KV+F+K+D+DE +DVA ++ + ++PT    KNG E+  VVGA+++ +   I  +A
Sbjct:   15 LEAAIKGDKLLVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGANEAGIRELIQANA 107          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.916e-16
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = 1
Query:  166 RLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 423
            +LV++ F A WCGPC+ I+P    LA +Y+ +VV LKV++DE  D+   +N+ S+PTF FIK G  ++  VG +   L + + +HAG
Sbjct:   21 KLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVGCNSDKLAKLMEKHAG 107          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TXNL1_RAT (Thioredoxin-like protein 1 OS=Rattus norvegicus GN=Txnl1 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.295e-15
Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = 1
Query:  103 VMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 417
            V  + S  +F+ +L+ A    RL ++ FT   CGPC  I+P F+++++KY + VFL+VD+ + +  A   NI + PTF F +N   +D+  GAD   LE KI QH
Sbjct:    4 VKPVGSDPDFQPELSGA--GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQH 106          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TXNL1_MOUSE (Thioredoxin-like protein 1 OS=Mus musculus GN=Txnl1 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.295e-15
Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = 1
Query:  103 VMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 417
            V  + S  +F+ +L+ A    RL ++ FT   CGPC  I+P F+++++KY + VFL+VD+ + +  A   NI + PTF F +N   +D+  GAD   LE KI QH
Sbjct:    4 VKPVGSDPDFQPELSGA--GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQH 106          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TXNL1_HUMAN (Thioredoxin-like protein 1 OS=Homo sapiens GN=TXNL1 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.295e-15
Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = 1
Query:  103 VMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 417
            V  + S  +F+ +L+ A    RL ++ FT   CGPC  I+P F+++++KY + VFL+VD+ + +  A   NI + PTF F +N   +D+  GAD   LE KI QH
Sbjct:    4 VKPVGSDPDFQPELSGA--GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQH 106          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TXND2_HUMAN (Thioredoxin domain-containing protein 2 OS=Homo sapiens GN=TXNDC2 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.295e-15
Identity = 49/116 (42.24%), Postives = 64/116 (55.17%), Query Frame = 1
Query:   67 DREALSGLRDGQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQ 414
            + E +      +V  I S  +FE  L  A    RLV + F+ATWCGPCR I P F  L+ K+  VVFL+VD D   +V     I  VPTF F K  ++VD++ GA K  LE  IA+
Sbjct:  438 EEETMEFPEGDKVKVILSKEDFEASLKEAGE--RLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKLEAVIAE 551          
The following BLAST results are available for this feature:
BLAST of CF835079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
THIO2_DROYA1.807e-1751.90Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
THIO1_CAEEL4.026e-1740.48Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
TXL1_SCHPO8.968e-1751.32Thioredoxin-like protein 1 OS=Schizosaccharomyces ... [more]
THIO_COPCM1.171e-1643.82Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
THIO_ECHGR9.916e-1638.71Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]
THIOT_DROME9.916e-1642.53Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]
TXNL1_RAT1.295e-1539.05Thioredoxin-like protein 1 OS=Rattus norvegicus GN... [more]
TXNL1_MOUSE1.295e-1539.05Thioredoxin-like protein 1 OS=Mus musculus GN=Txnl... [more]
TXNL1_HUMAN1.295e-1539.05Thioredoxin-like protein 1 OS=Homo sapiens GN=TXNL... [more]
TXND2_HUMAN1.295e-1542.24Thioredoxin domain-containing protein 2 OS=Homo sa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06K03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835079 ID=CF835079; Name=CF835079; organism=Citrus sinensis; type=EST; length=568bp
CGGCTGCGTAAAGAAAGGGAGCTAAAAAATTTTGAACGTGAGAGGCAAAG
AAAACAAGCTGGAGCCGATCGAGAAGCTTTGTCTGGTTTAAGGGATGGGC
AAGTAATGGGTATTCACTCAGCTAGTGAATTTGAAACTAAGTTGAATGCT
GCTACTAGAGCATTGCGCCTGGTGATTCTGTACTTTACTGCAACATGGTG
CGGGCCCTGCCGTTTCATTTCTCCTCTTTTTACAAACTTAGCCTCAAAAT
ACACGAAGGTTGTTTTCTTGAAAGTTGACATAGATGAGGCAAGAGATGTA
GCTACACGCTGGAATATTGGTTCTGTTCCCACCTTTTTCTTCATAAAGAA
TGGTAAGGAAGTTGACAAGGTTGTCGGGGCTGATAAAAGTGCACTTGAAA
GGAAGATTGCACAACATGCTGGCCAGTAAAACCACTCCTGAATAATGAGA
ACTTTAGAGTAATCTCTGCTTGCAAGCCTTTCCTACCCATTTGTTTGCCA
AGCAAATAATGTCTGATAAAATTTCAGTATTTGAATAAAAATAACTTGCT
CCAAAAAAAAAAAAAAAA
back to top