CF835079

Overview
NameCF835079
Unique NameCF835079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1776 contig Csv1_Contig1776:633..1200. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIO_STAEQ (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.985e-12
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 1
Query:  124 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 378
            S+F++K+ +  +     ++ F ATWCGPC+ I+P+   LA  Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    9 SDFDSKIESGVK-----LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVG 89          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.985e-12
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 1
Query:  166 RLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQH 417
            +LV++ F A WCGPCR ISP+   LA +Y  +V  +K++ DE   ++  + I S+PT    K+GK VD V+GA  KS L   + ++
Sbjct:   21 KLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKY 106          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: GLRX3_BOVIN (Glutaredoxin-3 OS=Bos taurus GN=GLRX3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.899e-12
Identity = 34/106 (32.08%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  103 VMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 420
            V+ + S+ +FE  L    RA  L++++F A W   C  ++ +   LA ++ +V F+K++ +   +V+ ++ I SVPTF F KN +++D++ GA    L +K+ +HA
Sbjct:   12 VVEVGSSGQFEELLRL--RAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHQQVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHA 115          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIO_NEUCR (Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12
Identity = 42/121 (34.71%), Postives = 67/121 (55.37%), Query Frame = 1
Query:   88 LRDGQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTK---VVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVD-----KVVGADKSALERKIAQHAGQ 426
            + DG V  I+SA EF   LN      + V+  F A WCGPC+ I+P++   A  ++    + F K+++D  + VA  + + ++PTF F KNGK+V       + GAD ++L R  A+  G+
Sbjct:    1 MSDG-VKHINSAQEFANLLNTT----QYVVADFYADWCGPCKAIAPMYAQFAKTFSIPNFLAFAKINVDSVQQVAQHYRVSAMPTFLFFKNGKQVAVNGSVMIQGADVNSL-RAAAEKMGR 115          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIO2_CHLTE (Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  166 RLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQHAG 423
            ++ ++ F A WCGPC  + P+   LA  Y  K +  K+++DE  + A ++ I S+PT   IK GK VD++VGA  K+ + +K+ +H G
Sbjct:   22 KVALVDFWAAWCGPCMMLGPVIEELAGDYEGKAIIAKLNVDENPNTAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKLDEHIG 109          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIO3_DICDI (Thioredoxin-3 OS=Dictyostelium discoideum GN=trxC PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.651e-12
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:  172 VILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSAL 396
            V++ F+A WCGPCR I+P+F  L++++T   F+ VDID+         I SVPTF+F  NG +V +  GA+++ L
Sbjct:   22 VVVDFSAEWCGPCRAIAPVFDKLSNEFTTFTFVHVDIDKVNTHPIVKEIRSVPTFYFYVNGAKVSEFSGANEATL 96          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIO1_DICDI (Thioredoxin-1 OS=Dictyostelium discoideum GN=trxA PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.651e-12
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query:  172 VILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSAL 396
            V++ F+A WCGPCR ISP+F  L++++    FL VDID+         I SVPTF F +NG +V +  GA +S L
Sbjct:   23 VVVDFSAVWCGPCRAISPVFEKLSNEFITFTFLHVDIDKLNVHPIVSKIKSVPTFHFYRNGSKVSEFSGASESIL 97          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIO1_ANASP (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=trxA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.651e-12
Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  172 VILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQH 417
            V++ F A WCGPCR ++P+   +A +Y  K+  +KV+ DE   VA+++ I S+PT    K G++VD VVGA  K+ L + + +H
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKH 106          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIO1_ANASO (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=trxA PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.651e-12
Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  172 VILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQH 417
            V++ F A WCGPCR ++P+   +A +Y  K+  +KV+ DE   VA+++ I S+PT    K G++VD VVGA  K+ L + + +H
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKH 106          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.686e-12
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = 1
Query:  124 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 378
            ++F++K+ +  +     ++ F ATWCGPC+ I+P+   LA+ Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    9 ADFDSKVESGVQ-----LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
The following BLAST results are available for this feature:
BLAST of CF835079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
THIO_STAEQ2.985e-1239.53Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_CYACA2.985e-1240.70Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
GLRX3_BOVIN3.899e-1232.08Glutaredoxin-3 OS=Bos taurus GN=GLRX3 PE=2 SV=1[more]
THIO_NEUCR5.092e-1234.71Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1[more]
THIO2_CHLTE5.092e-1237.50Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 S... [more]
THIO3_DICDI6.651e-1242.67Thioredoxin-3 OS=Dictyostelium discoideum GN=trxC ... [more]
THIO1_DICDI6.651e-1245.33Thioredoxin-1 OS=Dictyostelium discoideum GN=trxA ... [more]
THIO1_ANASP6.651e-1240.48Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO1_ANASO6.651e-1240.48Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN... [more]
THIO_STAAW8.686e-1238.37Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06K03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835079 ID=CF835079; Name=CF835079; organism=Citrus sinensis; type=EST; length=568bp
CGGCTGCGTAAAGAAAGGGAGCTAAAAAATTTTGAACGTGAGAGGCAAAG
AAAACAAGCTGGAGCCGATCGAGAAGCTTTGTCTGGTTTAAGGGATGGGC
AAGTAATGGGTATTCACTCAGCTAGTGAATTTGAAACTAAGTTGAATGCT
GCTACTAGAGCATTGCGCCTGGTGATTCTGTACTTTACTGCAACATGGTG
CGGGCCCTGCCGTTTCATTTCTCCTCTTTTTACAAACTTAGCCTCAAAAT
ACACGAAGGTTGTTTTCTTGAAAGTTGACATAGATGAGGCAAGAGATGTA
GCTACACGCTGGAATATTGGTTCTGTTCCCACCTTTTTCTTCATAAAGAA
TGGTAAGGAAGTTGACAAGGTTGTCGGGGCTGATAAAAGTGCACTTGAAA
GGAAGATTGCACAACATGCTGGCCAGTAAAACCACTCCTGAATAATGAGA
ACTTTAGAGTAATCTCTGCTTGCAAGCCTTTCCTACCCATTTGTTTGCCA
AGCAAATAATGTCTGATAAAATTTCAGTATTTGAATAAAAATAACTTGCT
CCAAAAAAAAAAAAAAAA
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