CF835079

Overview
NameCF835079
Unique NameCF835079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1776 contig Csv1_Contig1776:633..1200. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: GLRX3_MOUSE (Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.686e-12
Identity = 34/105 (32.38%), Postives = 63/105 (60.00%), Query Frame = 1
Query:  103 VMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 417
            V+ + SA +FE  L   T++L  ++++F A W   C  ++ +   LA ++  V F+K++ +   +V+ ++ I SVPTF F KN ++VD++ GA    L +K+ +H
Sbjct:   15 VVEVGSAQQFEELLRLKTKSL--LVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRH 117          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: GLRX3_HUMAN (Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 8.686e-12
Identity = 37/121 (30.58%), Postives = 69/121 (57.02%), Query Frame = 1
Query:   58 AGADREALSGLRDGQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 420
            AGA   A++ + +     + SA +FE  L    +A  L++++F A W   C  ++ +   LA +  +V F+K++ +   +V+ ++ I SVPTF F KN +++D++ GA    L +K+ +HA
Sbjct:    3 AGAAEAAVAAVEE-----VGSAGQFEELLRL--KAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHA 116          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TXND8_RAT (Thioredoxin domain-containing protein 8 OS=Rattus norvegicus GN=Txndc8 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.134e-11
Identity = 34/87 (39.08%), Postives = 54/87 (62.07%), Query Frame = 1
Query:  103 VMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEV 363
            V  I S  EF+  L AA    RLV++ F+A WCGPC+ I+P F  ++ +Y  V+F +VD+D ++++    +I  VPTF   K+ ++V
Sbjct:    2 VQKIKSMREFKELLGAAGN--RLVVVEFSAQWCGPCKMIAPAFQAMSLQYRNVMFAQVDVDSSQELTEHCSIQVVPTFQMFKHSRKV 86          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: GRS11_ORYSJ (Monothiol glutaredoxin-S11 OS=Oryza sativa subsp. japonica GN=GRXS11 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.134e-11
Identity = 32/97 (32.99%), Postives = 58/97 (59.79%), Query Frame = 1
Query:  133 ETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 423
            + +L AA    R   ++F A WC   + +  +F +LA  ++  VFL+V+ +E  +++  + + +VP F F+K GK VD + GA+ ++L  K+A+ AG
Sbjct:   10 KAELEAAAGGARAAAVHFWAAWCEASKQMDEVFAHLAVDFSHAVFLRVEAEEQPEISEAYGVTAVPYFVFLKEGKTVDTLEGANPASLANKVAKLAG 106          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: GLRX3_RAT (Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.134e-11
Identity = 34/105 (32.38%), Postives = 63/105 (60.00%), Query Frame = 1
Query:  103 VMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 417
            V+ + SA +FE  L   T++L  ++++F A W   C  ++ +   LA ++  V F+K++ +   +V+ ++ I SVPTF F KN ++VD++ GA    L +K+ +H
Sbjct:   15 VVEVGSARQFEELLRLKTKSL--LVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRH 117          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TR548_MIMIV (Thioredoxin-like protein R548 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R548 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 38/110 (34.55%), Postives = 59/110 (53.64%), Query Frame = 1
Query:   91 RDGQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEAR--DVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQ 414
            +   V  I + ++F T L   ++ L  VI+ F  TWCGPC+ I+P +  +A KY  V F K++ +     ++     I S+PTF F K GK + + V AD   LE+ I +
Sbjct:   27 KKNSVEEIITLNDFSTALGDESKGL--VIIDFFTTWCGPCKRIAPDYIRMAEKYPTVSFYKINAENENLANIVAACEIVSLPTFCFFKAGKYIGRFVNADPVGLEKSIVE 134          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIOM_RAT (Thioredoxin, mitochondrial OS=Rattus norvegicus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.935e-11
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1
Query:  172 VILYFTATWCGPCRFISPLFTNLASK-YTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG-ADKSALE 399
            V++ F A WCGPC+ + P    + +K + KVV  KVDID+  D+A  + + +VPT   IKNG  VDK VG  D+  LE
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLE 158          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIOM_MOUSE (Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.935e-11
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1
Query:  172 VILYFTATWCGPCRFISPLFTNLASK-YTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG-ADKSALE 399
            V++ F A WCGPC+ + P    + +K + KVV  KVDID+  D+A  + + +VPT   IKNG  VDK VG  D+  LE
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLE 158          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIO1_SYNE7 (Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.935e-11
Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  172 VILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQH 417
            V++ F A WCGPCR ++P+   +A +Y+ +V  +KV+ DE   VA+++ I S+PT    K+G+ VD VVGA  K+ L   + +H
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYSDQVKVVKVNTDENPSVASQYGIRSIPTLMIFKDGQRVDTVVGAVPKTTLANTLDKH 106          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 1
Query:  184 FTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG-ADKSALERKIAQH 417
            F ATWCGPC+ I+P+   LA  Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG   K  L   I +H
Sbjct:   24 FWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVIEKH 103          
The following BLAST results are available for this feature:
BLAST of CF835079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GLRX3_MOUSE8.686e-1232.38Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1[more]
GLRX3_HUMAN8.686e-1230.58Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2[more]
TXND8_RAT1.134e-1139.08Thioredoxin domain-containing protein 8 OS=Rattus ... [more]
GRS11_ORYSJ1.134e-1132.99Monothiol glutaredoxin-S11 OS=Oryza sativa subsp. ... [more]
GLRX3_RAT1.134e-1132.38Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 ... [more]
TR548_MIMIV1.482e-1134.55Thioredoxin-like protein R548 OS=Acanthamoeba poly... [more]
THIOM_RAT1.935e-1144.87Thioredoxin, mitochondrial OS=Rattus norvegicus GN... [more]
THIOM_MOUSE1.935e-1144.87Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2... [more]
THIO1_SYNE71.935e-1140.48Thioredoxin-1 OS=Synechococcus elongatus (strain P... [more]
THIO_STAS12.527e-1143.75Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06K03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835079 ID=CF835079; Name=CF835079; organism=Citrus sinensis; type=EST; length=568bp
CGGCTGCGTAAAGAAAGGGAGCTAAAAAATTTTGAACGTGAGAGGCAAAG
AAAACAAGCTGGAGCCGATCGAGAAGCTTTGTCTGGTTTAAGGGATGGGC
AAGTAATGGGTATTCACTCAGCTAGTGAATTTGAAACTAAGTTGAATGCT
GCTACTAGAGCATTGCGCCTGGTGATTCTGTACTTTACTGCAACATGGTG
CGGGCCCTGCCGTTTCATTTCTCCTCTTTTTACAAACTTAGCCTCAAAAT
ACACGAAGGTTGTTTTCTTGAAAGTTGACATAGATGAGGCAAGAGATGTA
GCTACACGCTGGAATATTGGTTCTGTTCCCACCTTTTTCTTCATAAAGAA
TGGTAAGGAAGTTGACAAGGTTGTCGGGGCTGATAAAAGTGCACTTGAAA
GGAAGATTGCACAACATGCTGGCCAGTAAAACCACTCCTGAATAATGAGA
ACTTTAGAGTAATCTCTGCTTGCAAGCCTTTCCTACCCATTTGTTTGCCA
AGCAAATAATGTCTGATAAAATTTCAGTATTTGAATAAAAATAACTTGCT
CCAAAAAAAAAAAAAAAA
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