CF835105

Overview
NameCF835105
Unique NameCF835105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835105_ssr108 microsatellite CF835105_ssr108:108..119. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4437 contig Csv1_Contig4437:157..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835105 vs. ExPASy Swiss-Prot
Match: DJC21_DANRE (DnaJ homolog subfamily C member 21 OS=Danio rerio GN=dnajc21 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.396e-11
Identity = 32/66 (48.48%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  141 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 338
            +Y +LG+++DAS  D++ AY KLA+KWHPD++  N   A +A  +F+ IQ AY VLSD  +R+ YD
Sbjct:    4 HYEVLGVKRDASDDDLKKAYRKLALKWHPDKNLDN---AEDAAEQFKLIQAAYDVLSDPQERAWYD 66          
BLAST of CF835105 vs. ExPASy Swiss-Prot
Match: DNAJ_TREDE (Chaperone protein dnaJ OS=Treponema denticola GN=dnaJ PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11
Identity = 59/179 (32.96%), Postives = 80/179 (44.69%), Query Frame = 3
Query:  141 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD------------AGLYDPLEEED-EDFYGFVQEMVSMMNNVKDEGDSFE-------------------DLQRMFVEMVDGMSFDFNYDPTDAQRACVNT-SKGKAAKRGTSRC 578
            YY +LG+ K AS  DI+ AY KLA+K+HPD   KN G    A+ +F++  EAY +L DE KRSMYD             G YDP   +  ED +G       +  N+   G S                     DLQ  FV+ V G   + +Y   +    C  T S+  ++KR    C
Sbjct:    8 YYEVLGVDKKASNDDIKKAYRKLAIKYHPD---KNQGDKA-AEEKFKEATEAYEILIDEKKRSMYDQFGHAGVDGMSGGGGYDPSAFQGFEDIFG--GSFSDIFENLFGGGFSSRSSGFGGRHAGPVRGSNLRYDLQISFVDAVYGKKAELSYTRNEKCSECHGTGSESGSSKRMCPDC 180          
BLAST of CF835105 vs. ExPASy Swiss-Prot
Match: DNAJ_PSEHT (Chaperone protein dnaJ OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11
Identity = 31/66 (46.97%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  141 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 338
            YY +LG+ KDAS  DI+ AY +LAMK+HPDR++ +     E + +F++++EAY +L+D  KR  YD
Sbjct:    6 YYEVLGVSKDASERDIKKAYKRLAMKYHPDRTSGDK----ELETKFKEVKEAYEILTDAQKRQTYD 67          
BLAST of CF835105 vs. ExPASy Swiss-Prot
Match: DNAJ_NEIMF (Chaperone protein dnaJ OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  141 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 338
            +YA LG+ + A+  +I+ AY KLAMK+HPDR+  N     EA+ +F+++Q+AY  LSD+ KR+MYD
Sbjct:    6 FYATLGVARTATDDEIKKAYRKLAMKYHPDRNPDNK----EAEEKFKEVQKAYETLSDKEKRAMYD 67          
BLAST of CF835105 vs. ExPASy Swiss-Prot
Match: DNAJ_NEIMB (Chaperone protein dnaJ OS=Neisseria meningitidis serogroup B GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  141 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 338
            +YA LG+ + A+  +I+ AY KLAMK+HPDR+  N     EA+ +F+++Q+AY  LSD+ KR+MYD
Sbjct:    6 FYATLGVARTATDDEIKKAYRKLAMKYHPDRNPDNK----EAEEKFKEVQKAYETLSDKEKRAMYD 67          
BLAST of CF835105 vs. ExPASy Swiss-Prot
Match: DNAJ_NEIMA (Chaperone protein dnaJ OS=Neisseria meningitidis serogroup A GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  141 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 338
            +YA LG+ + A+  +I+ AY KLAMK+HPDR+  N     EA+ +F+++Q+AY  LSD+ KR+MYD
Sbjct:    6 FYATLGVARTATDDEIKKAYRKLAMKYHPDRNPDNK----EAEEKFKEVQKAYETLSDKEKRAMYD 67          
BLAST of CF835105 vs. ExPASy Swiss-Prot
Match: DNAJ_NEIM0 (Chaperone protein dnaJ OS=Neisseria meningitidis serogroup C (strain 053442) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  141 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 338
            +YA LG+ + A+  +I+ AY KLAMK+HPDR+  N     EA+ +F+++Q+AY  LSD+ KR+MYD
Sbjct:    6 FYATLGVARTATDDEIKKAYRKLAMKYHPDRNPDNK----EAEEKFKEVQKAYETLSDKEKRAMYD 67          
BLAST of CF835105 vs. ExPASy Swiss-Prot
Match: DNAJ_MARMM (Chaperone protein dnaJ OS=Maricaulis maris (strain MCS10) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  141 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 338
            +Y +LG+ K A    ++SAY K AMK+HPDR   NPG A EA+ +F+ + EAYSVLSD NKR+ YD
Sbjct:    6 FYEVLGVDKTADEKTLKSAYRKQAMKYHPDR---NPGDA-EAEAQFKVVGEAYSVLSDPNKRAAYD 67          
BLAST of CF835105 vs. ExPASy Swiss-Prot
Match: DNAJ_BURM1 (Chaperone protein dnaJ OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11
Identity = 32/66 (48.48%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  141 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 338
            YY +LG+ K+AS  +I+ AY KLAMK+HPDR+  N     +A+  F++++EAY +LSD  KR+ YD
Sbjct:    6 YYEVLGVAKNASDDEIKKAYRKLAMKYHPDRNPDNK----DAEEHFKEVKEAYEMLSDSQKRAAYD 67          
BLAST of CF835105 vs. ExPASy Swiss-Prot
Match: DNJA3_HUMAN (DnaJ homolog subfamily A member 3, mitochondrial OS=Homo sapiens GN=DNAJA3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 3
Query:  141 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA 341
            YY ILG+ ++AS  +I+ AY++LA K+HPD +  +P    +AK +F Q+ EAY VLSDE KR  YDA
Sbjct:   94 YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDP----KAKEKFSQLAEAYEVLSDEVKRKQYDA 156          
The following BLAST results are available for this feature:
BLAST of CF835105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
DJC21_DANRE1.396e-1148.48DnaJ homolog subfamily C member 21 OS=Danio rerio ... [more]
DNAJ_TREDE1.823e-1132.96Chaperone protein dnaJ OS=Treponema denticola GN=d... [more]
DNAJ_PSEHT1.823e-1146.97Chaperone protein dnaJ OS=Pseudoalteromonas halopl... [more]
DNAJ_NEIMF1.823e-1148.48Chaperone protein dnaJ OS=Neisseria meningitidis s... [more]
DNAJ_NEIMB1.823e-1148.48Chaperone protein dnaJ OS=Neisseria meningitidis s... [more]
DNAJ_NEIMA1.823e-1148.48Chaperone protein dnaJ OS=Neisseria meningitidis s... [more]
DNAJ_NEIM01.823e-1148.48Chaperone protein dnaJ OS=Neisseria meningitidis s... [more]
DNAJ_MARMM1.823e-1154.55Chaperone protein dnaJ OS=Maricaulis maris (strain... [more]
DNAJ_BURM11.823e-1148.48Chaperone protein dnaJ OS=Burkholderia multivorans... [more]
DNJA3_HUMAN2.381e-1150.75DnaJ homolog subfamily A member 3, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06K24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06K24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835105 ID=CF835105; Name=CF835105; organism=Citrus sinensis; type=EST; length=633bp
TCTAATGCTCCCTTATAACAGTTTGTTTCCGTTTCTTCATATGATTTTAT
CTTGACAAGCATATTACATCCTTATTGCTGTTTTCTTTTTTGGTTGCTGT
GATGGATGGAGGAGGAGGATCCAACGGCGGATCTTTGAGCTACTACGCGA
TTCTTGGGATTCGCAAGGACGCCTCCTTCTCTGACATTCGCTCCGCTTAT
CACAAGCTCGCCATGAAATGGCATCCGGATAGGAGTGCGAAGAACCCGGG
AGTGGCCGGGGAAGCCAAATGCCGGTTTCAGCAAATTCAAGAAGCTTACT
CCGTCCTCTCTGATGAGAACAAGAGGTCAATGTACGATGCTGGACTCTAT
GATCCCCTTGAGGAAGAAGATGAGGACTTCTATGGTTTTGTGCAAGAGAT
GGTCTCCATGATGAATAATGTTAAAGACGAGGGGGACAGTTTTGAGGACC
TCCAAAGGATGTTCGTGGAAATGGTGGATGGGATGAGCTTCGACTTTAAT
TATGATCCTACGGACGCGCAAAGAGCATGTGTCAACACATCAAAGGGTAA
AGCGGCCAAGCGCGGTACTTCTCGTTGCTGACAATCGCTCTGGATCATCT
CTGATCATTCAAGCTAATGATGATGTTGTTGAT
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