CF835114

Overview
NameCF835114
Unique NameCF835114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS1_ARATH (Plastocyanin minor isoform, chloroplastic OS=Arabidopsis thaliana GN=PETE PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 7.476e-44
Identity = 92/142 (64.79%), Postives = 104/142 (73.24%), Query Frame = -3
Query:  177 STMKASASAV---PKLSIKATLKDVGXXXXXXXXXXXXXXXXXAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTV 593
            ST+  S SA    PKL++K++LKD G                 A+EVLLG DDGSLAFVPS F+V+ GEKIVFKNNAGFPHNVVFDEDEIPSGVD SKISM    LLNG GETY VTLTE G+Y  YC+PHQGAGMVG++TV
Sbjct:   29 STISRSTSATRAPPKLALKSSLKDFGVIAVATAASIVLAGNAMAMEVLLGSDDGSLAFVPSEFTVAKGEKIVFKNNAGFPHNVVFDEDEIPSGVDASKISMDETALLNGAGETYEVTLTEPGSYGFYCAPHQGAGMVGKLTV 170          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_SOLCR (Plastocyanin OS=Solanum crispum GN=PETE PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 9.764e-44
Identity = 83/99 (83.84%), Postives = 90/99 (90.91%), Query Frame = -3
Query:  174 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 470
            IEVLLG DDG LAFVP +FS+S+GEKI FKNNAGFPHNVVFDEDEIP+GVD SKISM  EDLLN PGETY+VTL+EKGTYS YCSPHQGAGMVG+VTVN
Sbjct:    1 IEVLLGSDDGGLAFVPGNFSISAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMPEEDLLNAPGETYSVTLSEKGTYSFYCSPHQGAGMVGKVTVN 99          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_SAMNI (Plastocyanin OS=Sambucus nigra GN=PETE PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 9.764e-44
Identity = 81/99 (81.82%), Postives = 91/99 (91.92%), Query Frame = -3
Query:  174 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 470
            +E+LLGG+DGSLAF+PS+FSV SGEKI FKNNAGFPHNVVFDEDE+PSGVD +KISMS +DLLN PGETY+VTLTE GTY  YCSPHQGAGMVG+VTVN
Sbjct:    1 VEILLGGEDGSLAFIPSNFSVPSGEKITFKNNAGFPHNVVFDEDEVPSGVDSAKISMSEDDLLNAPGETYSVTLTESGTYKFYCSPHQGAGMVGKVTVN 99          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_CUCPE (Plastocyanin OS=Cucurbita pepo GN=PETE PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 9.764e-44
Identity = 83/99 (83.84%), Postives = 90/99 (90.91%), Query Frame = -3
Query:  174 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 470
            IEVLLGGDDGSLAF+P+ FSV++GEKIVFKNNAGFPHNVVFDEDEIPSGVD  KISM+ EDLLN PGE Y V LTEKG+YS YCSPHQGAGMVG+VTVN
Sbjct:    1 IEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDAGKISMNEEDLLNAPGEVYKVNLTEKGSYSFYCSPHQGAGMVGKVTVN 99          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_LACSA (Plastocyanin OS=Lactuca sativa GN=PETE PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.665e-43
Identity = 84/98 (85.71%), Postives = 89/98 (90.82%), Query Frame = -3
Query:  174 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 467
            EVLLG  DG L F PS+FSV+SGEKIVFKNNAGFPHNVVFDEDEIP+GVD SKISMS EDLLN PGETYAVTLTEKGTYS YC+PHQGAGMVG+VTVN
Sbjct:    2 EVLLGSSDGGLVFEPSTFSVASGEKIVFKNNAGFPHNVVFDEDEIPAGVDASKISMSEEDLLNAPGETYAVTLTEKGTYSFYCAPHQGAGMVGKVTVN 99          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_MERPE (Plastocyanin OS=Mercurialis perennis GN=PETE PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.841e-43
Identity = 83/99 (83.84%), Postives = 89/99 (89.90%), Query Frame = -3
Query:  174 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 470
            ++VLLG DDG LAFVP++FSV SGEKI FKNNAGFPHNVVFDEDEIPSGVD SKISM   DLLN PGETYAVTLTEKG+YS YCSPHQGAGMVG+VTVN
Sbjct:    1 LDVLLGSDDGELAFVPNNFSVPSGEKITFKNNAGFPHNVVFDEDEIPSGVDASKISMDEADLLNAPGETYAVTLTEKGSYSFYCSPHQGAGMVGKVTVN 99          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_SOLTU (Plastocyanin OS=Solanum tuberosum GN=PETE PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 6.329e-43
Identity = 80/99 (80.81%), Postives = 92/99 (92.93%), Query Frame = -3
Query:  174 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 470
            ++VLLGGDDGSLAF+P +FSVS+GEKI FKNNAGFPHNVVFDEDEIP+GVD SKISM+ EDLLN  GETY+VTL+EKGTY+ YC+PHQGAGMVG+VTVN
Sbjct:    1 LDVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMAEEDLLNAAGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 99          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_CUCSA (Plastocyanin OS=Cucumis sativus GN=PETE PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.410e-42
Identity = 79/99 (79.80%), Postives = 90/99 (90.91%), Query Frame = -3
Query:  174 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 470
            IE+LLGGDDGSLAFVP++F+V+SGEKI FKNNAGFPHNVVFDEDEIPSGVD  KISM+ EDLL+ PG+ Y V LT+KG+YS YCSPHQGAGMVG+VTVN
Sbjct:    1 IEILLGGDDGSLAFVPNNFTVASGEKITFKNNAGFPHNVVFDEDEIPSGVDSGKISMNEEDLLBAPGZVYZVZLTZKGSYSFYCSPHQGAGMVGKVTVN 99          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_CAPBU (Plastocyanin OS=Capsella bursa-pastoris GN=PETE PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.194e-41
Identity = 81/99 (81.82%), Postives = 86/99 (86.87%), Query Frame = -3
Query:  174 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 470
            IEVLLGG DGSLAFVP+ FS++ GEKIVFKNNAGFPHNVVFDEDEIPSGVD SKISM   DLLN  GETY V LTE GTYS YC+PHQGAGMVG+VTVN
Sbjct:    1 IEVLLGGGDGSLAFVPNDFSIAKGEKIVFKNNAGFPHNVVFDEDEIPSGVDASKISMDENDLLNAAGETYEVALTEAGTYSFYCAPHQGAGMVGKVTVN 99          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_PHAVU (Plastocyanin OS=Phaseolus vulgaris GN=PETE PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.473e-41
Identity = 81/99 (81.82%), Postives = 85/99 (85.86%), Query Frame = -3
Query:  174 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 470
            +EVLLG  DGSL FVPS FSV SGEKIVFKNNAGFPHNVVFDEDEIP+GVD  KISM  E+LLN PGETY VTL  KGTYS YCSPHQGAGMVG+VTVN
Sbjct:    1 LEVLLGSGDGSLVFVPSEFSVPSGEKIVFKNNAGFPHNVVFDEDEIPAGVDAVKISMPEEELLNAPGETYVVTLDTKGTYSFYCSPHQGAGMVGKVTVN 99          
The following BLAST results are available for this feature:
BLAST of CF835114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PLAS1_ARATH7.476e-4464.79Plastocyanin minor isoform, chloroplastic OS=Arabi... [more]
PLAS_SOLCR9.764e-4483.84Plastocyanin OS=Solanum crispum GN=PETE PE=1 SV=1[more]
PLAS_SAMNI9.764e-4481.82Plastocyanin OS=Sambucus nigra GN=PETE PE=1 SV=1[more]
PLAS_CUCPE9.764e-4483.84Plastocyanin OS=Cucurbita pepo GN=PETE PE=1 SV=1[more]
PLAS_LACSA1.665e-4385.71Plastocyanin OS=Lactuca sativa GN=PETE PE=1 SV=1[more]
PLAS_MERPE2.841e-4383.84Plastocyanin OS=Mercurialis perennis GN=PETE PE=1 ... [more]
PLAS_SOLTU6.329e-4380.81Plastocyanin OS=Solanum tuberosum GN=PETE PE=1 SV=... [more]
PLAS_CUCSA1.410e-4279.80Plastocyanin OS=Cucumis sativus GN=PETE PE=1 SV=1[more]
PLAS_CAPBU1.194e-4181.82Plastocyanin OS=Capsella bursa-pastoris GN=PETE PE... [more]
PLAS_PHAVU3.473e-4181.82Plastocyanin OS=Phaseolus vulgaris GN=PETE PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835114 ID=CF835114; Name=CF835114; organism=Citrus sinensis; type=EST; length=607bp
TTTTTTTTTTTTTTTTTAATGGAAAATACAGAGGTTTATTGGNTCCCCCT
TATAAGTCCCACCACATAACATTCTCTCTCACCAAATGCCCTTATGTATG
ATACTCATAAAATGCAAAAAGAAGAGAACGATAACCAATGAGATGAGGCA
AACAAAGTCTGAATGTGAACTTAATTAACAGTCACTTGTCCAACCATGCC
AGCTCCTTGGTGAGGGGAACAGTACAAAGAGTAAGTGCCTTTTTCAGTCA
GAGTAACAGCATAAGTCTCTCCAGGACCATTGAGAAGGTCTTCTGTAGAC
ATGGAGATTTTTGAAACATCAACACCACTCGGAATCTCATCTTCATCGAA
AACAACGTTGTGTGGGAACCCAGCATTGTTCTTGAACACAATCTTTTCAC
CGGAGCTGACAGAGAAAGAGCTTGGAACAAAAGCCAAGGACCCATCATCA
CCACCAAGCAAAACCTCAATGGCCATGGCATTGCTAGCAAGCATTGCGCT
GGCAGCTGTGGCCGCAACGGCCACTCCAACATCTTTGAGTGTGGCCTTGA
TGCTGAGCTTTGGGACAGCAGAGGCTGAGGCCTTCATGGTGGAACCAACA
ACTCTGG
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