CF835114

Overview
NameCF835114
Unique NameCF835114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig444 contig Csv1_Contig444:151..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_VICFA (Plastocyanin OS=Vicia faba GN=PETE PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.736e-41
Identity = 79/99 (79.80%), Postives = 85/99 (85.86%), Query Frame = -3
Query:  174 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 470
            +EVLLG  DG LAFVP+SF VS+G+ IVFKNNAGFPHNVVFDEDEIPSGVD +KISM  EDLLN PGETY+V L  KGTY  YCSPHQGAGMVGQVTVN
Sbjct:    1 VEVLLGASDGGLAFVPNSFEVSAGDTIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMPEEDLLNAPGETYSVKLDAKGTYKFYCSPHQGAGMVGQVTVN 99          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_FRIAG (Plastocyanin, chloroplastic OS=Fritillaria agrestis GN=PETE PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.724e-40
Identity = 80/128 (62.50%), Postives = 96/128 (75.00%), Query Frame = -3
Query:  174 SIKATLKD-VGXXXXXXXXXXXXXXXXXAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 554
            S+KA+ K+ +G                 A+EVLLGG DGSLAFVPS+  V++GE +VFKNNAGFPHNV+FDEDE+P GVD   ISM  EDLLN PGET++VTL EKGTYS+YCSPHQGAGM G++TVN
Sbjct:   39 SVKASFKEAIGTALVATAAGAVLASNALAVEVLLGGSDGSLAFVPSNIEVAAGETVVFKNNAGFPHNVLFDEDEVPKGVDAGAISMKEEDLLNAPGETFSVTLKEKGTYSIYCSPHQGAGMAGKITVN 166          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_GINBI (Plastocyanin OS=Ginkgo biloba GN=PETE PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.737e-36
Identity = 68/99 (68.69%), Postives = 81/99 (81.82%), Query Frame = -3
Query:  174 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 470
            +EVL+GG  G LAF+P+   V++GE+IVFKNNAGFPHNV+FDED +P+GVDVS ISMS EDLLN PGETY V L +KGTY  +C+PHQG GM G VTVN
Sbjct:    1 VEVLMGGSGGELAFIPNELQVNAGEQIVFKNNAGFPHNVIFDEDAVPAGVDVSSISMSEEDLLNAPGETYVVKLDKKGTYRFFCAPHQGIGMSGIVTVN 99          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_PETCR (Plastocyanin A/B OS=Petroselinum crispum GN=PETE PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.413e-34
Identity = 69/98 (70.41%), Postives = 78/98 (79.59%), Query Frame = -3
Query:  174 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 467
            EV LG DDG L F PSSF+V++GEKI FKNNAGFPHN+VFDEDE+P+GV+  KIS    + LNG GETY VTLTEKGTY  YC PH GAGM G+VTVN
Sbjct:    2 EVKLGSDDGGLVFSPSSFTVAAGEKITFKNNAGFPHNIVFDEDEVPAGVNAEKISQ--PEYLNGAGETYEVTLTEKGTYKFYCEPHAGAGMKGEVTVN 97          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_DAUCA (Plastocyanin OS=Daucus carota GN=PETE PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.846e-34
Identity = 70/97 (72.16%), Postives = 79/97 (81.44%), Query Frame = -3
Query:  177 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTV 467
            EV LG DDG+L F PSSFSV+ GE I FKNNAGFPHN+VFDEDE+P+GVDVSKIS   ED L+G GE++ VTLTEKGTY  YC PH GAGM G+VTV
Sbjct:    2 EVKLGADDGALVFSPSSFSVAKGEGISFKNNAGFPHNIVFDEDEVPAGVDVSKISQ--EDYLDGAGESFTVTLTEKGTYKFYCEPHAGAGMKGEVTV 96          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_ORYSJ (Plastocyanin, chloroplastic OS=Oryza sativa subsp. japonica GN=PETE PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.041e-33
Identity = 69/98 (70.41%), Postives = 77/98 (78.57%), Query Frame = -3
Query:  174 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 467
            EVLLG + G L F P+ F+V SGE I FKNNAGFPHNVVFDED +PSGVDVSKIS   E+ LN PGET++VTLT  GTY  YC PH GAGMVG+VTVN
Sbjct:   59 EVLLGANGGVLVFEPNDFTVKSGETITFKNNAGFPHNVVFDEDAVPSGVDVSKISQ--EEYLNAPGETFSVTLTVPGTYGFYCEPHAGAGMVGKVTVN 154          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_ORYSI (Plastocyanin, chloroplastic OS=Oryza sativa subsp. indica GN=PETE PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.041e-33
Identity = 69/98 (70.41%), Postives = 77/98 (78.57%), Query Frame = -3
Query:  174 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 467
            EVLLG + G L F P+ F+V SGE I FKNNAGFPHNVVFDED +PSGVDVSKIS   E+ LN PGET++VTLT  GTY  YC PH GAGMVG+VTVN
Sbjct:   59 EVLLGANGGVLVFEPNDFTVKSGETITFKNNAGFPHNVVFDEDAVPSGVDVSKISQ--EEYLNAPGETFSVTLTVPGTYGFYCEPHAGAGMVGKVTVN 154          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_HORVU (Plastocyanin, chloroplastic OS=Hordeum vulgare GN=PETE PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.026e-32
Identity = 66/98 (67.35%), Postives = 76/98 (77.55%), Query Frame = -3
Query:  174 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 467
            +VLLG + G L F P+ FSV +GE I FKNNAG+PHNVVFDED +PSGVDVSKIS   E+ L  PGET++VTLT  GTY  YC PH GAGMVG+VTVN
Sbjct:   60 DVLLGANGGVLVFEPNDFSVKAGETITFKNNAGYPHNVVFDEDAVPSGVDVSKISQ--EEYLTAPGETFSVTLTVPGTYGFYCEPHAGAGMVGKVTVN 155          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_CHLRE (Plastocyanin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETE PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.809e-28
Identity = 58/96 (60.42%), Postives = 69/96 (71.88%), Query Frame = -3
Query:  177 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTV 464
            V LG D G+L FVP + ++ SGE + F NNAGFPHN+VFDED IPSGV+   I  S +D LN PGETY+V LT  G Y  YC PHQGAGMVG++ V
Sbjct:   51 VKLGADSGALEFVPKTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAI--SRDDYLNAPGETYSVKLTAAGEYGYYCEPHQGAGMVGKIIV 144          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_PHYPA (Plastocyanin, chloroplastic OS=Physcomitrella patens GN=PETE PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.358e-27
Identity = 55/97 (56.70%), Postives = 68/97 (70.10%), Query Frame = -3
Query:  174 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 464
            V +GGDDG+L F P   SV++GE + F NN GFPHNVVFDED +P+GV    I  + ED LNGP E++++T    GTY  YC PHQGAGM G VTV+
Sbjct:   74 VKMGGDDGALGFYPKDISVAAGESVTFVNNKGFPHNVVFDEDAVPAGVKTEDI--NHEDYLNGPNESFSITFKTPGTYEFYCEPHQGAGMKGVVTVS 168          
The following BLAST results are available for this feature:
BLAST of CF835114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PLAS_VICFA7.736e-4179.80Plastocyanin OS=Vicia faba GN=PETE PE=1 SV=1[more]
PLAS_FRIAG1.724e-4062.50Plastocyanin, chloroplastic OS=Fritillaria agresti... [more]
PLAS_GINBI5.737e-3668.69Plastocyanin OS=Ginkgo biloba GN=PETE PE=1 SV=1[more]
PLAS_PETCR1.413e-3470.41Plastocyanin A/B OS=Petroselinum crispum GN=PETE P... [more]
PLAS_DAUCA1.846e-3472.16Plastocyanin OS=Daucus carota GN=PETE PE=1 SV=1[more]
PLAS_ORYSJ2.041e-3370.41Plastocyanin, chloroplastic OS=Oryza sativa subsp.... [more]
PLAS_ORYSI2.041e-3370.41Plastocyanin, chloroplastic OS=Oryza sativa subsp.... [more]
PLAS_HORVU5.026e-3267.35Plastocyanin, chloroplastic OS=Hordeum vulgare GN=... [more]
PLAS_CHLRE9.809e-2860.42Plastocyanin, chloroplastic OS=Chlamydomonas reinh... [more]
PLAS_PHYPA6.358e-2756.70Plastocyanin, chloroplastic OS=Physcomitrella pate... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835114 ID=CF835114; Name=CF835114; organism=Citrus sinensis; type=EST; length=607bp
TTTTTTTTTTTTTTTTTAATGGAAAATACAGAGGTTTATTGGNTCCCCCT
TATAAGTCCCACCACATAACATTCTCTCTCACCAAATGCCCTTATGTATG
ATACTCATAAAATGCAAAAAGAAGAGAACGATAACCAATGAGATGAGGCA
AACAAAGTCTGAATGTGAACTTAATTAACAGTCACTTGTCCAACCATGCC
AGCTCCTTGGTGAGGGGAACAGTACAAAGAGTAAGTGCCTTTTTCAGTCA
GAGTAACAGCATAAGTCTCTCCAGGACCATTGAGAAGGTCTTCTGTAGAC
ATGGAGATTTTTGAAACATCAACACCACTCGGAATCTCATCTTCATCGAA
AACAACGTTGTGTGGGAACCCAGCATTGTTCTTGAACACAATCTTTTCAC
CGGAGCTGACAGAGAAAGAGCTTGGAACAAAAGCCAAGGACCCATCATCA
CCACCAAGCAAAACCTCAATGGCCATGGCATTGCTAGCAAGCATTGCGCT
GGCAGCTGTGGCCGCAACGGCCACTCCAACATCTTTGAGTGTGGCCTTGA
TGCTGAGCTTTGGGACAGCAGAGGCTGAGGCCTTCATGGTGGAACCAACA
ACTCTGG
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