CF835116

Overview
NameCF835116
Unique NameCF835116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B7_ORYSJ (Histone H2B.7 OS=Oryza sativa subsp. japonica GN=H2B.7 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.966e-42
Identity = 94/122 (77.05%), Postives = 102/122 (83.61%), Query Frame = -3 
Query:  242 KPKAGKKLPK---EAASGDXXXXXXXK---SIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 589
            KPKA K+LP    E  SG+       K   S+ETYKIYIFKVLKQVHPDIGISSKAM IM SFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   32 KPKAEKRLPAGKGEKGSGEGKKAGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B7_ORYSI (Histone H2B.7 OS=Oryza sativa subsp. indica GN=H2B.7 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.966e-42
Identity = 94/122 (77.05%), Postives = 102/122 (83.61%), Query Frame = -3 
Query:  242 KPKAGKKLPK---EAASGDXXXXXXXK---SIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 589
            KPKA K+LP    E  SG+       K   S+ETYKIYIFKVLKQVHPDIGISSKAM IM SFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   32 KPKAEKRLPAGKGEKGSGEGKKAGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B4_ORYSJ (Histone H2B.4 OS=Oryza sativa subsp. japonica GN=H2B.4 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.966e-42
Identity = 94/122 (77.05%), Postives = 102/122 (83.61%), Query Frame = -3 
Query:  242 KPKAGKKLPK---EAASGDXXXXXXXK---SIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 589
            KPKA K+LP    E  SG+       K   S+ETYKIYIFKVLKQVHPDIGISSKAM IM SFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   32 KPKAEKRLPAGKAEKGSGEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B4_ORYSI (Histone H2B.4 OS=Oryza sativa subsp. indica GN=H2B.4 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.966e-42
Identity = 94/122 (77.05%), Postives = 102/122 (83.61%), Query Frame = -3 
Query:  242 KPKAGKKLPK---EAASGDXXXXXXXK---SIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 589
            KPKA K+LP    E  SG+       K   S+ETYKIYIFKVLKQVHPDIGISSKAM IM SFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   32 KPKAEKRLPAGKAEKGSGEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B3_ORYSJ (Histone H2B.3 OS=Oryza sativa subsp. japonica GN=H2B.3 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.966e-42
Identity = 94/122 (77.05%), Postives = 102/122 (83.61%), Query Frame = -3 
Query:  242 KPKAGKKLPK---EAASGDXXXXXXXK---SIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 589
            KPKA K+LP    E  SG+       K   S+ETYKIYIFKVLKQVHPDIGISSKAM IM SFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   32 KPKAEKRLPAGKAEKGSGEGRKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B3_ORYSI (Histone H2B.3 OS=Oryza sativa subsp. indica GN=H2B.3 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.966e-42
Identity = 94/122 (77.05%), Postives = 102/122 (83.61%), Query Frame = -3 
Query:  242 KPKAGKKLPK---EAASGDXXXXXXXK---SIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 589
            KPKA K+LP    E  SG+       K   S+ETYKIYIFKVLKQVHPDIGISSKAM IM SFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   32 KPKAEKRLPAGKAEKGSGEGRKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B9_ORYSJ (Histone H2B.9 OS=Oryza sativa subsp. japonica GN=H2B.9 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.874e-42
Identity = 93/123 (75.61%), Postives = 103/123 (83.74%), Query Frame = -3 
Query:  242 KPKAGKKLP----KEAASGDXXXXXXXK---SIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 589
            KPKA K+LP    ++  +G+       K   S+ETYKIYIFKVLKQVHPDIGISSKAM IM SFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   30 KPKAEKRLPAGKGEKGGAGEGKKAGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 152
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B9_ORYSI (Histone H2B.9 OS=Oryza sativa subsp. indica GN=H2B.9 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.874e-42
Identity = 93/123 (75.61%), Postives = 103/123 (83.74%), Query Frame = -3 
Query:  242 KPKAGKKLP----KEAASGDXXXXXXXK---SIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 589
            KPKA K+LP    ++  +G+       K   S+ETYKIYIFKVLKQVHPDIGISSKAM IM SFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   30 KPKAEKRLPAGKGEKGGAGEGKKAGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 152
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B4_WHEAT (Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 5.060e-42
Identity = 91/117 (77.78%), Postives = 99/117 (84.62%), Query Frame = -3 
Query:  242 KPKAGKKLPKEAASGDXXXXXXXK-SIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 589
            KPKA KK+P     G+       K S+ETYKIYIFKVLKQVHPDIGISSKAM I  SFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   19 KPKAEKKVPTSKEGGEKKGKKKSKKSMETYKIYIFKVLKQVHPDIGISSKAMSITNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 135
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B2_WHEAT (Histone H2B.2 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 6.609e-42
Identity = 95/127 (74.80%), Postives = 101/127 (79.53%), Query Frame = -3 
Query:  242 KPKAGKKLP------KEAAS-----GDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 589
            KPKA K+LP      KEA       G        K +ETYKIYIFKVLKQVHPDIGISSKAM IM SFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   24 KPKAEKRLPAGKTASKEAGGEGKTRGRKKGSKAKKGVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
The following BLAST results are available for this feature:
BLAST of CF835116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B7_ORYSJ2.966e-4277.05Histone H2B.7 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B7_ORYSI2.966e-4277.05Histone H2B.7 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B4_ORYSJ2.966e-4277.05Histone H2B.4 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B4_ORYSI2.966e-4277.05Histone H2B.4 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B3_ORYSJ2.966e-4277.05Histone H2B.3 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B3_ORYSI2.966e-4277.05Histone H2B.3 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B9_ORYSJ3.874e-4275.61Histone H2B.9 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B9_ORYSI3.874e-4275.61Histone H2B.9 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B4_WHEAT5.060e-4277.78Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 S... [more]
H2B2_WHEAT6.609e-4274.80Histone H2B.2 OS=Triticum aestivum PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06L06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835116 ID=CF835116; Name=CF835116; organism=Citrus sinensis; type=EST; length=591bp
TTTTTTTTTTTTTTTTTCGAAATATATTTCATTTTCATATTCTACCCTAT
ATGAACATGCACATCACCTGGATCAGGTCCAAATTTCCTAGTACATCCAA
ACAAACCCTAAAAATCCACCAAAGATTTGAAAACACAAAACATAAAAACG
ACTTCATCTAGTAAAATTAAAGGCCTAAACTACTAACTACACAAATCACA
TAACACCGGAATTCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGT
AAACTTAGTAACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCT
CACCAGGAAGTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATC
GTCGGCTTCTTATTGTACCTTGCAAGCCTAGAAGCTTCCTGGGCAAGCTT
CTCGAAAATATCGTTGATGAAACTGGTCATGATTCCCATGGCCTTGCTCG
AGATTCCGATATCGGGATGTACCTGCTTCAGGACTTTGAAAATGTAAATC
TTGTACGTCTCGATGCTCTTCTTCGCGCGCTTCTTCTTCTTGTCGCCAGA
GGCGGCTTCTTTGGGAAGCTTCTTGCCGGCCTTCGGCTTCT
back to top