CF835116

Overview
NameCF835116
Unique NameCF835116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B_ONCMY (Histone H2B OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 2.873e-37
Identity = 79/115 (68.70%), Postives = 90/115 (78.26%), Query Frame = -3 
Query:  242 PKAGKKLPKEAASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 586
            PK G K      +G           E+Y IY++KVLKQVHPD GISSKAMGIM SF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:    9 PKKGSKKAVTKTAGKGGKKRKRSRKESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B_CHITH (Histone H2B OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 2.873e-37
Identity = 84/116 (72.41%), Postives = 93/116 (80.17%), Query Frame = -3 
Query:  242 KAGKKLPK--EAASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 583
            KA KK  K  +A S D       K  E+Y IYIFKVLKQVHPD G+SSKAM IM SF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:    9 KAAKKAGKAQKAISKDDKKKRRHKRKESYAIYIFKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 124
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B3B_MOUSE (Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 2.873e-37
Identity = 79/115 (68.70%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  242 PKAGKKLPKEAASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 586
            PK G K     A             E+Y IY++KVLKQVHPD GISSKAMGIM SF+NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   11 PKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B3B_HUMAN (Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 2.873e-37
Identity = 79/115 (68.70%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  242 PKAGKKLPKEAASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 586
            PK G K     A             E+Y IY++KVLKQVHPD GISSKAMGIM SF+NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   11 PKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B1P_MOUSE (Histone H2B type 1-P OS=Mus musculus GN=Hist1h2bp PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 2.873e-37
Identity = 79/115 (68.70%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  242 PKAGKKLPKEAASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 586
            PK G K     A             E+Y +Y++KVLKQVHPD GISSKAMGIM SF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   11 PKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B1L_HUMAN (Histone H2B type 1-L OS=Homo sapiens GN=HIST1H2BL PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 2.873e-37
Identity = 79/115 (68.70%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  242 PKAGKKLPKEAASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 586
            PK G K     A             E+Y +Y++KVLKQVHPD GISSKAMGIM SF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   11 PKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B1F_MOUSE (Histone H2B type 1-F/J/L OS=Mus musculus GN=Hist1h2bf PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 2.873e-37
Identity = 79/115 (68.70%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  242 PKAGKKLPKEAASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 586
            PK G K     A             E+Y +Y++KVLKQVHPD GISSKAMGIM SF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   11 PKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B1B_MOUSE (Histone H2B type 1-B OS=Mus musculus GN=Hist1h2bb PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 2.873e-37
Identity = 79/115 (68.70%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  242 PKAGKKLPKEAASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 586
            PK G K     A             E+Y +Y++KVLKQVHPD GISSKAMGIM SF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   11 PKKGSKKAISKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B3A_MOUSE (Histone H2B type 3-A OS=Mus musculus GN=Hist3h2ba PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 3.753e-37
Identity = 79/115 (68.70%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  242 PKAGKKLPKEAASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 586
            PK G K     A             E+Y IY++KVLKQVHPD GISSKAMGIM SF+NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   11 PKKGSKKAITKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B2E_PONAB (Histone H2B type 2-E OS=Pongo abelii GN=HIST2H2BE PE=2 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 3.753e-37
Identity = 80/115 (69.57%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  242 PKAGKKLPKEAASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 586
            PK G K     A             E+Y IY++KVLKQVHPD GISSKAMGIM SF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   11 PKKGSKKAVTKAQKKDGKKRKRSCKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
The following BLAST results are available for this feature:
BLAST of CF835116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_ONCMY2.873e-3768.70Histone H2B OS=Oncorhynchus mykiss PE=1 SV=2[more]
H2B_CHITH2.873e-3772.41Histone H2B OS=Chironomus thummi thummi PE=3 SV=2[more]
H2B3B_MOUSE2.873e-3768.70Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb ... [more]
H2B3B_HUMAN2.873e-3768.70Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB ... [more]
H2B1P_MOUSE2.873e-3768.70Histone H2B type 1-P OS=Mus musculus GN=Hist1h2bp ... [more]
H2B1L_HUMAN2.873e-3768.70Histone H2B type 1-L OS=Homo sapiens GN=HIST1H2BL ... [more]
H2B1F_MOUSE2.873e-3768.70Histone H2B type 1-F/J/L OS=Mus musculus GN=Hist1h... [more]
H2B1B_MOUSE2.873e-3768.70Histone H2B type 1-B OS=Mus musculus GN=Hist1h2bb ... [more]
H2B3A_MOUSE3.753e-3768.70Histone H2B type 3-A OS=Mus musculus GN=Hist3h2ba ... [more]
H2B2E_PONAB3.753e-3769.57Histone H2B type 2-E OS=Pongo abelii GN=HIST2H2BE ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835116 ID=CF835116; Name=CF835116; organism=Citrus sinensis; type=EST; length=591bp
TTTTTTTTTTTTTTTTTCGAAATATATTTCATTTTCATATTCTACCCTAT
ATGAACATGCACATCACCTGGATCAGGTCCAAATTTCCTAGTACATCCAA
ACAAACCCTAAAAATCCACCAAAGATTTGAAAACACAAAACATAAAAACG
ACTTCATCTAGTAAAATTAAAGGCCTAAACTACTAACTACACAAATCACA
TAACACCGGAATTCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGT
AAACTTAGTAACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCT
CACCAGGAAGTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATC
GTCGGCTTCTTATTGTACCTTGCAAGCCTAGAAGCTTCCTGGGCAAGCTT
CTCGAAAATATCGTTGATGAAACTGGTCATGATTCCCATGGCCTTGCTCG
AGATTCCGATATCGGGATGTACCTGCTTCAGGACTTTGAAAATGTAAATC
TTGTACGTCTCGATGCTCTTCTTCGCGCGCTTCTTCTTCTTGTCGCCAGA
GGCGGCTTCTTTGGGAAGCTTCTTGCCGGCCTTCGGCTTCT
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