CF835116

Overview
NameCF835116
Unique NameCF835116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B2E_HUMAN (Histone H2B type 2-E OS=Homo sapiens GN=HIST2H2BE PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 3.753e-37
Identity = 80/115 (69.57%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  242 PKAGKKLPKEAASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 586
            PK G K     A             E+Y IY++KVLKQVHPD GISSKAMGIM SF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   11 PKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B1O_HUMAN (Histone H2B type 1-O OS=Homo sapiens GN=HIST1H2BO PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 3.753e-37
Identity = 80/115 (69.57%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  242 PKAGKKLPKEAASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 586
            PK G K     A             E+Y IY++KVLKQVHPD GISSKAMGIM SF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   11 PKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B_PATGR (Histone H2B, gonadal OS=Patella granatina PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 4.901e-37
Identity = 84/114 (73.68%), Postives = 93/114 (81.58%), Query Frame = -3 
Query:  242 KAGKKLPKEAASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 583
            KAGK   K A SGD       K  E+Y IYI+KVLKQVHPD G+SSKAM IM SF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   12 KAGKA--KAARSGDKKRKRRRK--ESYSIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 121
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B1_PONAB (Histone H2B type 1 OS=Pongo abelii PE=2 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 4.901e-37
Identity = 79/115 (68.70%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  242 PKAGKKLPKEAASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 586
            PK G K     A             E+Y +Y++KVLKQVHPD GISSKAMGIM SF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   11 PKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B1_BOVIN (Histone H2B type 1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 4.901e-37
Identity = 79/115 (68.70%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  242 PKAGKKLPKEAASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 586
            PK G K     A             E+Y +Y++KVLKQVHPD GISSKAMGIM SF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   11 PKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B1N_HUMAN (Histone H2B type 1-N OS=Homo sapiens GN=HIST1H2BN PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 4.901e-37
Identity = 79/115 (68.70%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  242 PKAGKKLPKEAASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 586
            PK G K     A             E+Y +Y++KVLKQVHPD GISSKAMGIM SF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   11 PKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B1M_MOUSE (Histone H2B type 1-M OS=Mus musculus GN=Hist1h2bm PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 4.901e-37
Identity = 79/115 (68.70%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  242 PKAGKKLPKEAASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 586
            PK G K     A             E+Y +Y++KVLKQVHPD GISSKAMGIM SF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   11 PKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B1M_HUMAN (Histone H2B type 1-M OS=Homo sapiens GN=HIST1H2BM PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 4.901e-37
Identity = 79/115 (68.70%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  242 PKAGKKLPKEAASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 586
            PK G K     A             E+Y +Y++KVLKQVHPD GISSKAMGIM SF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   11 PKKGSKKAINKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B1H_MOUSE (Histone H2B type 1-H OS=Mus musculus GN=Hist1h2bh PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 4.901e-37
Identity = 79/115 (68.70%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  242 PKAGKKLPKEAASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 586
            PK G K     A             E+Y +Y++KVLKQVHPD GISSKAMGIM SF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   11 PKKGSKKALTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B1H_HUMAN (Histone H2B type 1-H OS=Homo sapiens GN=HIST1H2BH PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 4.901e-37
Identity = 79/115 (68.70%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  242 PKAGKKLPKEAASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 586
            PK G K     A             E+Y +Y++KVLKQVHPD GISSKAMGIM SF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   11 PKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
The following BLAST results are available for this feature:
BLAST of CF835116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B2E_HUMAN3.753e-3769.57Histone H2B type 2-E OS=Homo sapiens GN=HIST2H2BE ... [more]
H2B1O_HUMAN3.753e-3769.57Histone H2B type 1-O OS=Homo sapiens GN=HIST1H2BO ... [more]
H2B_PATGR4.901e-3773.68Histone H2B, gonadal OS=Patella granatina PE=1 SV=... [more]
H2B1_PONAB4.901e-3768.70Histone H2B type 1 OS=Pongo abelii PE=2 SV=3[more]
H2B1_BOVIN4.901e-3768.70Histone H2B type 1 OS=Bos taurus PE=1 SV=2[more]
H2B1N_HUMAN4.901e-3768.70Histone H2B type 1-N OS=Homo sapiens GN=HIST1H2BN ... [more]
H2B1M_MOUSE4.901e-3768.70Histone H2B type 1-M OS=Mus musculus GN=Hist1h2bm ... [more]
H2B1M_HUMAN4.901e-3768.70Histone H2B type 1-M OS=Homo sapiens GN=HIST1H2BM ... [more]
H2B1H_MOUSE4.901e-3768.70Histone H2B type 1-H OS=Mus musculus GN=Hist1h2bh ... [more]
H2B1H_HUMAN4.901e-3768.70Histone H2B type 1-H OS=Homo sapiens GN=HIST1H2BH ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06L06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835116 ID=CF835116; Name=CF835116; organism=Citrus sinensis; type=EST; length=591bp
TTTTTTTTTTTTTTTTTCGAAATATATTTCATTTTCATATTCTACCCTAT
ATGAACATGCACATCACCTGGATCAGGTCCAAATTTCCTAGTACATCCAA
ACAAACCCTAAAAATCCACCAAAGATTTGAAAACACAAAACATAAAAACG
ACTTCATCTAGTAAAATTAAAGGCCTAAACTACTAACTACACAAATCACA
TAACACCGGAATTCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGT
AAACTTAGTAACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCT
CACCAGGAAGTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATC
GTCGGCTTCTTATTGTACCTTGCAAGCCTAGAAGCTTCCTGGGCAAGCTT
CTCGAAAATATCGTTGATGAAACTGGTCATGATTCCCATGGCCTTGCTCG
AGATTCCGATATCGGGATGTACCTGCTTCAGGACTTTGAAAATGTAAATC
TTGTACGTCTCGATGCTCTTCTTCGCGCGCTTCTTCTTCTTGTCGCCAGA
GGCGGCTTCTTTGGGAAGCTTCTTGCCGGCCTTCGGCTTCT
back to top