CF835117

Overview
NameCF835117
Unique NameCF835117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835117_ssr60 microsatellite CF835117_ssr60:60..69. BLAST: Citrus ESTs to Prunus persica proteins V1
CF835117_ssr224 microsatellite CF835117_ssr224:224..235. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5660 contig Csv1_Contig5660:382..1024. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835117 vs. ExPASy Swiss-Prot
Match: H2B1_SOLLC (Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=2 SV=4)

HSP 1 Score: 171.785 bits (434), Expect = 2.714e-42
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = 2 
Query:  248 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 523
            S+ETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   51 SVETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSN 142
[Close]
BLAST of CF835117 vs. ExPASy Swiss-Prot
Match: H2B6_ORYSJ (Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.545e-42
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 2 
Query:  248 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 523
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
[Close]
BLAST of CF835117 vs. ExPASy Swiss-Prot
Match: H2B_TOBAC (Histone H2B OS=Nicotiana tabacum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 7.897e-42
Identity = 87/103 (84.47%), Postives = 93/103 (90.29%), Query Frame = 2 
Query:  215 SGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 523
            +GD        S+ETYKIYIF+VLK VHPDIGISSKAMGIMNSFINDIFEKLA+E+SRLA YNKKPTI+SREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   44 AGDKKKKRAEMSVETYKIYIFRVLKHVHPDIGISSKAMGIMNSFINDIFEKLARESSRLAGYNKKPTISSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 146
[Close]
BLAST of CF835117 vs. ExPASy Swiss-Prot
Match: H2B5_MAIZE (Histone H2B.5 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 7.897e-42
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 2 
Query:  248 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 523
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   63 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 154
[Close]
BLAST of CF835117 vs. ExPASy Swiss-Prot
Match: H2B4_MAIZE (Histone H2B.4 OS=Zea mays PE=3 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 7.897e-42
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 2 
Query:  248 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 523
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   46 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 137
[Close]
BLAST of CF835117 vs. ExPASy Swiss-Prot
Match: H2B2_MAIZE (Histone H2B.2 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 7.897e-42
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 2 
Query:  248 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 523
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   59 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of CF835117 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSJ (Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H2B.8 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.031e-41
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 2 
Query:  248 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 523
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
[Close]
BLAST of CF835117 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSI (Histone H2B.8 OS=Oryza sativa subsp. indica GN=H2B.8 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.031e-41
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 2 
Query:  248 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 523
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
[Close]
BLAST of CF835117 vs. ExPASy Swiss-Prot
Match: H2B6_ORYSI (Histone H2B.6 OS=Oryza sativa subsp. indica GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.031e-41
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 2 
Query:  248 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 523
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
[Close]
BLAST of CF835117 vs. ExPASy Swiss-Prot
Match: H2B5_WHEAT (Histone H2B.5 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 1.031e-41
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 2 
Query:  248 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 523
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   45 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 136
The following BLAST results are available for this feature:
BLAST of CF835117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B1_SOLLC2.714e-4294.57Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=... [more]
H2B6_ORYSJ3.545e-4294.57Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B_TOBAC7.897e-4284.47Histone H2B OS=Nicotiana tabacum GN=HIS2B PE=2 SV=... [more]
H2B5_MAIZE7.897e-4293.48Histone H2B.5 OS=Zea mays PE=2 SV=3[more]
H2B4_MAIZE7.897e-4293.48Histone H2B.4 OS=Zea mays PE=3 SV=3[more]
H2B2_MAIZE7.897e-4293.48Histone H2B.2 OS=Zea mays PE=2 SV=3[more]
H2B8_ORYSJ1.031e-4193.48Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B8_ORYSI1.031e-4193.48Histone H2B.8 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B6_ORYSI1.031e-4193.48Histone H2B.6 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B5_WHEAT1.031e-4193.48Histone H2B.5 OS=Triticum aestivum PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835117 ID=CF835117; Name=CF835117; organism=Citrus sinensis; type=EST; length=643bp
GGCTTTACTCTTCTCTTAAAGAAGTAAAAGGAAAAGAAAATATCTACAAG
CCTTCCTTTTCTCTCTCTCTACCAAACCGAAATTAATGGCACCAAAGGCG
GAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAGACATCGGT
GGCCGAGAAGGCGCCGGCGGAGAAGAAGCCGAAGGCCGGCAAGAAGCTTC
CCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGAAGAAGAGC
ATCGAGACGTACAAGATTTACATCTTCAAAGTCCTGAAGCAGGTACATCC
CGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTCATCA
ACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGTAC
AATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACCGCTGTGAGACT
TGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAGGGTACCAAAG
CTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTGCATCGGTCGGT
GAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTAGGCCTTTAATT
TTACTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAAATCTT
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